G515127 (LOC106585477)


Basic Information

Item Value
gene id G515127
gene name LOC106585477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48290211 ~ 48290564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584338
GACTAGTTGAGGACTCTGTGattctgacactctcttctgagctcagttgagaatattgagtactcacgctcaagtcttcattgggtgagggtgactgggaaatagtatagtcatcaagctttgataggACACCATCAACAAACCAACAAGCCTCTAGGGACTCATCAGATGAACTTACAACGGCTAAGGATTTACTCTCCACttttgataactctgacttgtagatggaaaaaacactgctaagaacttcttgagtactggtatccagattggagagacagagagctggtattgGTTGGCTCTCTCTGGGAACTCTACTGTGTTCGGTGCTGGGTAACTGGACCTCAACAGTTG

Function

NR:

description
uncharacterized protein LOC110515943 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584338 True 354 lncRNA 0.44 1 48290211 48290564

Neighbor

gene id symbol gene type direction distance location
LOC118964891 LOC106585521 coding upstream 12669 48272553 ~ 48277542 (+)
LOC118964885 LOC106585521 coding upstream 40262 48244976 ~ 48249949 (+)
LOC118964888 LOC106585521 coding upstream 54216 47725631 ~ 48235995 (+)
LOC118964887 LOC106585521 coding upstream 250414 48037087 ~ 48039797 (+)
LOC110512140 LOC106585521 coding upstream 286782 47997906 ~ 48003429 (+)
LOC110512253 LOC106585521 coding downstream 9156 48299720 ~ 48302420 (+)
LOC118936658 LOC106585521 coding downstream 37304 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 64049 48354613 ~ 48393007 (+)
LOC110514397 LOC106585521 coding downstream 66985 48357549 ~ 48358334 (+)
LOC118964893 LOC106585521 coding downstream 68289 48358853 ~ 48360349 (+)
G515061 NA non-coding upstream 567367 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 573343 47716038 ~ 47716868 (+)
G515056 NA non-coding upstream 580852 47709155 ~ 47709359 (+)
G515051 NA non-coding upstream 584326 47705511 ~ 47705885 (+)
LOC118964879 LOC106585521 non-coding upstream 617614 47671331 ~ 47675493 (+)
G515132 NA non-coding downstream 24696 48315260 ~ 48315527 (+)
G515135 LOC106585477 non-coding downstream 27166 48317730 ~ 48318344 (+)
G515137 LOC106585477 non-coding downstream 28323 48318887 ~ 48319224 (+)
G515153 NA non-coding downstream 41103 48331667 ~ 48331992 (+)
G515189 LOC100135962 non-coding downstream 241813 48532377 ~ 48587888 (+)
G515069 NA other upstream 337957 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 773501 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 960967 47303183 ~ 47329244 (+)
G514665 NA other upstream 970161 47306438 ~ 47320050 (+)
G514499 NA other upstream 1267119 47022294 ~ 47023092 (+)
LOC110526072 LOC106587002 other downstream 658053 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 893309 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 943015 49233579 ~ 49260632 (+)
G516011 NA other downstream 1014561 49305125 ~ 49307140 (+)

Expression


Co-expression Network