Gene
RNA
| Item | Value |
|---|---|
| gene id | G515135 |
| gene name | LOC106585477 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 48317730 ~ 48318344 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC110512252 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU584347 | True | 615 | lncRNA | 0.47 | 1 | 48317730 | 48318344 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110512253 | LOC106585521 | coding | upstream | 15310 | 48299720 ~ 48302420 (+) |
| LOC118964891 | LOC106585521 | coding | upstream | 40188 | 48272553 ~ 48277542 (+) |
| LOC118964885 | LOC106585521 | coding | upstream | 67781 | 48244976 ~ 48249949 (+) |
| LOC118964887 | LOC106585521 | coding | upstream | 277933 | 48037087 ~ 48039797 (+) |
| LOC110512140 | LOC106585521 | coding | upstream | 314301 | 47997906 ~ 48003429 (+) |
| LOC118936658 | LOC106585521 | coding | downstream | 9524 | 48327868 ~ 48331446 (+) |
| LOC110526080 | LOC106585521 | coding | downstream | 36269 | 48354613 ~ 48393007 (+) |
| LOC110514397 | LOC106585521 | coding | downstream | 39205 | 48357549 ~ 48358334 (+) |
| LOC118964893 | LOC106585521 | coding | downstream | 40509 | 48358853 ~ 48360349 (+) |
| cntrl | cntrl | coding | downstream | 101429 | 48419773 ~ 48528758 (+) |
| G515132 | NA | non-coding | upstream | 2203 | 48315260 ~ 48315527 (+) |
| G515127 | LOC106585477 | non-coding | upstream | 27166 | 48290211 ~ 48290564 (+) |
| G515061 | NA | non-coding | upstream | 594886 | 47722434 ~ 47722844 (+) |
| G515057 | NA | non-coding | upstream | 600862 | 47716038 ~ 47716868 (+) |
| G515056 | NA | non-coding | upstream | 608371 | 47709155 ~ 47709359 (+) |
| G515137 | LOC106585477 | non-coding | downstream | 543 | 48318887 ~ 48319224 (+) |
| G515153 | NA | non-coding | downstream | 13323 | 48331667 ~ 48331992 (+) |
| G515189 | LOC100135962 | non-coding | downstream | 214033 | 48532377 ~ 48587888 (+) |
| G515190 | c5 | non-coding | downstream | 277174 | 48595518 ~ 48619629 (+) |
| G515262 | NA | non-coding | downstream | 281439 | 48599783 ~ 48602381 (+) |
| G515069 | NA | other | upstream | 365476 | 47950006 ~ 47952254 (+) |
| LOC118964881 | LOC106585521 | other | upstream | 801020 | 47425001 ~ 47519480 (+) |
| G514662 | LOC106597055 | other | upstream | 988486 | 47303183 ~ 47329244 (+) |
| G514665 | NA | other | upstream | 997680 | 47306438 ~ 47320050 (+) |
| G514499 | NA | other | upstream | 1294638 | 47022294 ~ 47023092 (+) |
| LOC110526072 | LOC106587002 | other | downstream | 630273 | 48948617 ~ 49037542 (+) |
| edf1 | edf1 | other | downstream | 865529 | 49183291 ~ 49187334 (+) |
| LOC110526066 | LOC106584148 | other | downstream | 915235 | 49233579 ~ 49260632 (+) |
| G516011 | NA | other | downstream | 986781 | 49305125 ~ 49307140 (+) |
