G515190 (c5)


Basic Information

Item Value
gene id G515190
gene name c5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48595518 ~ 48619629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584415
AAGTGCATTGACACATTTGTCCTTGACATCTATCCACACTGAGTCGGCAACCAGCTCAGGTGTCTTCTCCCCATGCAGTATGTAGTAGACTAGCAGGCGTATCGATGGCACCATGTCTGAGGTCACTGTGAAACTAATGGCTTGGGAACCTGTACCTTGGAGACGCTTTTCAGAAGCAAACTTCACTATCTTACCCCTCGAGATGATCTGGCATAGAAGTCAGATGGGTAGGTCAGGAAGAGGTAAATTGTTAGAATTACAgaacattttaaattatttttttgttttgttatattactttttttttacagaaatctttttattttttactttgacctaatggggtattatgtgtagatcagtgacaacaAATCCCaaataaatcattttaaattccacttggtaacaaaacaaaatgtgaaaaagccCAAGAGGGGTGCATACTTATTATAGGCACAGTATGACTAGAAAACTAACATCACTTACCTGGTAGCTGAAAGTCTCAATTCGGAGGTAGCTGCGAGCATGGAAGTAGATTTGAATGCTGACATGTTGTCCAACTTGAAGGCCGGAGTAATCGGACGGCAAATCAATGTACAAGTAGCGTTCGTTGGGGGACGAGTATGCCTTGGCTTCAAGTGTATATTCCGCTTGACTACCGAAGGGTAACCTCTCATCAGCAGTCTTGAACTGAAAAATAAAACTTGCACTCTCGGCTTCAGAATGAAGGTTGCAAATAAAAAGAGCAATCCCATCGTCCTTGGTCCTCTTACTGTTATCCACTGTCAGTGTAGGACACTGAAGTTTTTCATCTACACCAAGTTTGTTTTTGATGAAGGAATTCACCAACTTCACTGGTACCAATGCCACAGGTTCCCCCAAGTGGTCCTTGACTGACACCTGGTGGCAAAACCCCCATACAGTCTTAttaaaaag
>TU584416
AAGTGCATTGACACATTTGTCCTTGACATCTATCCACACTGAGTCGGCAACCAGCTCAGGTGTCTTCTCCCCATGCAGTATGTAGTAGACTAGCAGGCGTATCGATGGCACCATGTCTGAGGTCACTGTGAAACTAATGGCTTGGGAACCTGTACCTTGGAGACGCTTTTCAGAAGCAAACTTCACTATCTTACCCCTCGAGATGATCTGGCATAGAAGTCAGATGGGTAGGTCAGGAAGAGGTAAATTGTTAGAATTACAgaacattttaaattatttttttgttttgttatattactttttttttacagaaatctttttattttttactttgacctaatggggtattatgtgtagatcagtgacaacaAATCCCaaataaatcattttaaattccacttggtaacaaaacaaaatgtgaaaaagccCAAGAGGGGTGCATACTTATTATAGGCACAGTATGACTAGAAAACTAACATCACTTACCTGGTAGCTGAAAGTCTCAATTCGGAGGTAGCTGCGAGCATGGAAGTAGATTTGAATGCTGACATGTTGTCCAACTTGAAGGCCGGAGTAATCGGACGGCAAATCAATGTACAAGTAGCGTTCGTTGGGGGACGAGTATGCCTTGGCTTCAAGTGTATATTCCGCTTGACTACCGAAGGGTAACCTCTCATCAGCAGTCTTGAACTGAAAAATAAAACTTGCACTCTCGGCTTCAGAATGAAGGTTGCAAATAAAAAGAGCAATCCCATCGTCCTTGGTCCTCTTACTGTTATCCACTGTCAGTGTAGGACACTGAAGTTTTTCATCTACACCAAGTTTGTTTTTGATGAAGGAATTCACCAACTTCACTGGTACCAATGCCACAGGTTCCCCCAAGTGGTCCTTGACTGACACCCTGATAGCGTATGGCAGTCCTGGTTTGATGAAAGGAGGAGTAGCGACAAGACTCAGTCTGTACGGGGACTTTAGGAACTTCACATTGACCATCTCAGCTTCCTGGGAGATACCACCTAGAGAGATTAAAAATAACCTTGTCTGATCAAAAATAGAGTAATAATATGTTCCTGCTAAACTAAATGATGCAATCATTTTGCAATAATGGAATGATCTTCTTTGAATGATCAATCAAACTCTAGGTCAAAGTGAGCTAATCTTAGATGCATTACTATTGTTTAAATGGATAGGCCTAATGGAGCTGATTTTTTTTTATAGAGTATGTATTTTGGCATcaatactgtagatatgtgtatAACAAGGGGGGCCTACACTGTGCGTCTCTCACCAGTTGGCTCTTGTACCATCACAGCCAAATACAGGAACTTTTCCACCATCCCTTCCAGCTCTTTGGGTCCATCTTCAAGTGATAGAGCTTTCTTCATGTTTATGCACACCTCCACGTCACCACTTTCTGTCATCTGAAAAGTTTGATCACAATTTTGCTTAAAAACCCCAGTGGC

Function

symbol description
c5 Predicted to enable endopeptidase inhibitor activity. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including complement component 5 deficiency; liver cirrhosis; neutropenia; paroxysmal nocturnal hemoglobinuria; and pneumonia. Orthologous to human C5 (complement C5).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584415 False 936 lncRNA 0.41 2 48595518 48597251
TU584416 True 1463 lncRNA 0.41 3 48595518 48619629

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding upstream 66760 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 202511 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 235169 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 237184 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 264072 48327868 ~ 48331446 (+)
LOC110526072 LOC106587002 coding downstream 329363 48948617 ~ 49037542 (+)
cmlc1 myl4 coding downstream 442821 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 457028 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 526498 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 563662 49183291 ~ 49187334 (+)
G515189 LOC100135962 non-coding upstream 7630 48532377 ~ 48587888 (+)
G515153 NA non-coding upstream 263526 48331667 ~ 48331992 (+)
G515137 LOC106585477 non-coding upstream 276294 48318887 ~ 48319224 (+)
G515135 LOC106585477 non-coding upstream 277174 48317730 ~ 48318344 (+)
G515132 NA non-coding upstream 279991 48315260 ~ 48315527 (+)
G515308 NA non-coding downstream 55255 48674884 ~ 48675558 (+)
G515346 NA non-coding downstream 104865 48724494 ~ 48724744 (+)
G515446 NA non-coding downstream 275288 48894917 ~ 48895566 (+)
G515447 NA non-coding downstream 276048 48895677 ~ 48896770 (+)
G515460 NA non-coding downstream 279467 48899096 ~ 48899301 (+)
G515069 NA other upstream 643264 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1078808 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1266274 47303183 ~ 47329244 (+)
G514665 NA other upstream 1275468 47306438 ~ 47320050 (+)
LOC110526066 LOC106584148 other downstream 613950 49233579 ~ 49260632 (+)
G516011 NA other downstream 685496 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 766885 49347319 ~ 49387212 (+)

Expression


Co-expression Network