G515262


Basic Information

Item Value
gene id G515262
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48599783 ~ 48602381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584493
tttttttttttaattaatcaGTAAATTAGAATTTATCCATAACATTTGTTGTAATATATGTTCTATCTTTTCTGGAGAataaaactgaaattgcaaccagtttgtatggcttgtttaagAAAGGGTGATACTTTGAAAAAAAAGTTCAATTAGTTCGGAAATTCGAAATCTGTAtaaaggcaaaaaggcaattTTTGAACAAAGGATGAGCCTTTCTTAAATCTTCTTAGGGATAAGGGGCAGTATTCGaaagtttggatgactgaggtgcccaaagtaaactgcctgttactcaggcccagaagctaggatatgcatatgcatgggAATATTGGataaaaacactctaaagtttctaaaacggttactgatttggcaggcgaaaccccgaggacaatcGATCCAGGAAAATGTATTTTGAGGTAATTGGATTATCCAATGCTTTTCTATGGCGAAGCCAAATTATTAGGACCcaggttgcagttcctatggcttccactagatgtcaacagtctttagaaattgttcgatgttgttgtttttttaatgaaaaagTAGTCGAATTCTTTCTAAGTGTCACTCAGGTGGACTCTAGTCTTTTGGTGCGCATGAATGAGAGTGCGCTCTGTGTTGTTTTTCTCCGGTATTGGAAACAGTTTATTCCCTCTaaaattgtatcgattatttaaattttagggtacctgaggttggattagaaacgttgtttgaaatgtttgaaccaagtttacaggtaacttattagatcctttgtaggcatgttgggcgagttggaaccggtgtatttctgaataaaacgcgccaaataaacagacattttggggataataaagaaggactttatcaaacaaaacgaccattcattgtgtaactgagacctttgggattgcaaaaagatgaagatcttcaaaggtaagcgatttattttatcgctattgctgactttcgtgatgcatctgtatggttgaaaaatgtttttcatacttttgtatgcggggcgctgtcctcagataattgcatggtatgctttcgccgtaaagcctttttgaaatctggcaaagcggctggattaacctCTCTGAGCACGGAACCCTGtcgcgggctgaaattccacaacatacggtgattgctacataaatagtcatattaaacattaatgaaaatacaagtgtctcacatgtttcgaaagcctagaatcttgataatccaactgcgttgtcagatttaaaaaaggatttactgcgaaagaatacgatgcgattatctgaggatagagcccataaaaaaaactatttcaaccagcacaggctaacaaaatcacaaactgcattaaaataaattgtttacctttgacgatcttcatctgtTTACAATCCCagtgctcattgttacacaatgaatgatcttttgtttgataaaatctgtttttatagccaaacacaaaacattttgtgaaccgcttgtgtcatGAATTCCATCTCACTCCATTTTCAATGACACATTCGAGGGTAAATACCCAcacaaaacgtgacttttccagtcatgtttggtttcattgcaatcaactggtttgtttgtaacacaaccaaacctgatgggccattttgcgggacgtattgactgaaagaaaccgatttgaagacaacaagtaatgacatcattgtgcaccaatgatatgactgaccactgtttcgttgattgactgtattttaacccaatgaccactgatcatcttgaaatctagctgggtagatagccaatgagctgaggtatacggcaatatgcaatggttatgtgttggaagaccaacccatgtagtaaactcctgtgtaaagagagtcattcgctattgaagttttatACCGGAAAGAGCTACGCATATTACGCACAgcattgtttggtaaacgcgcagattcagctgtttatatatcaatcagtatggcgactaagtcagttAAAGCTAAAtcgaagtctagatatacaggtgTACACACAACTTTAGAAGAAACTGATTggaaaagtgagacagagattgttgtaggacgattcatttagcgattcccaagtggaggaatattttttgaatagAGAGGacatgttttggactggtaagttcttctcatgctaatgcccttgtttgaaattaataatatgaaatattatttgtgattttagaagcaatatataaaaatataatgcaatgaaatgtgagatgcgtgtgtctgccgccccaccccaacccacatgaaatagcctatttgaggctgttgaggggagggcagacccacaacaatggccaaagtgaaatggagacagtagatacagctggtctgttgtaatacaataaagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgaaatgtcataatataaaagagacagtagatctagcaggtctataataatatattcaaccttatgttccctgtattctatacagtggggcaaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584493 True 2573 lncRNA 0.37 2 48599783 48602381

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding upstream 71025 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 206776 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 239434 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 241449 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 268337 48327868 ~ 48331446 (+)
LOC110526072 LOC106587002 coding downstream 346611 48948617 ~ 49037542 (+)
cmlc1 myl4 coding downstream 460069 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 474276 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 543746 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 580910 49183291 ~ 49187334 (+)
G515189 LOC100135962 non-coding upstream 11895 48532377 ~ 48587888 (+)
G515153 NA non-coding upstream 267791 48331667 ~ 48331992 (+)
G515137 LOC106585477 non-coding upstream 280559 48318887 ~ 48319224 (+)
G515135 LOC106585477 non-coding upstream 281439 48317730 ~ 48318344 (+)
G515132 NA non-coding upstream 284256 48315260 ~ 48315527 (+)
G515308 NA non-coding downstream 72503 48674884 ~ 48675558 (+)
G515346 NA non-coding downstream 122113 48724494 ~ 48724744 (+)
G515446 NA non-coding downstream 292536 48894917 ~ 48895566 (+)
G515447 NA non-coding downstream 293296 48895677 ~ 48896770 (+)
G515460 NA non-coding downstream 296715 48899096 ~ 48899301 (+)
G515069 NA other upstream 647529 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1083073 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1270539 47303183 ~ 47329244 (+)
LOC110526066 LOC106584148 other downstream 631198 49233579 ~ 49260632 (+)
G516011 NA other downstream 702744 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 784133 49347319 ~ 49387212 (+)

Expression


Co-expression Network