G515346


Basic Information

Item Value
gene id G515346
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48724494 ~ 48724744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584589
gctgttccagtttcaactgttctgcctgcggctatggaaccctaaactgttcatttttactcttgaggtgctgtcctgttgcaccctctacaaccactgtgatctccacccggcacagccagaagaggactggccacccctcatagcctggttgcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584589 True 224 lncRNA 0.52 2 48724494 48724744

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding upstream 195736 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 331487 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 364145 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 366160 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 393048 48327868 ~ 48331446 (+)
LOC110526072 LOC106587002 coding downstream 224248 48948617 ~ 49037542 (+)
cmlc1 myl4 coding downstream 337706 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 351913 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 421383 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 458547 49183291 ~ 49187334 (+)
G515308 NA non-coding upstream 48936 48674884 ~ 48675558 (+)
G515190 c5 non-coding upstream 104865 48595518 ~ 48619629 (+)
G515262 NA non-coding upstream 122113 48599783 ~ 48602381 (+)
G515189 LOC100135962 non-coding upstream 136606 48532377 ~ 48587888 (+)
G515153 NA non-coding upstream 392502 48331667 ~ 48331992 (+)
G515446 NA non-coding downstream 170173 48894917 ~ 48895566 (+)
G515447 NA non-coding downstream 170933 48895677 ~ 48896770 (+)
G515460 NA non-coding downstream 174352 48899096 ~ 48899301 (+)
G515442 LOC106587003 non-coding downstream 174657 48899401 ~ 48900834 (+)
G515821 NA non-coding downstream 215842 48940586 ~ 48941783 (+)
G515069 NA other upstream 772240 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1207784 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1395250 47303183 ~ 47329244 (+)
LOC110526066 LOC106584148 other downstream 508835 49233579 ~ 49260632 (+)
G516011 NA other downstream 580381 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 661770 49347319 ~ 49387212 (+)

Expression


Co-expression Network