G515442 (LOC106587003)


Basic Information

Item Value
gene id G515442
gene name LOC106587003
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48899401 ~ 48900834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584691
TcatactttaataaatggaaaaaCACTGAGTGAGACCAATGATAGAGGGCTTTAAAGCTAAATGGCCCTGTTGTGCTGGATGACATAGAATACTATAATTAACCAATTGTAAACTTTGGACTCAATTGACAGCACTCACATTTGTCATATGGAATAGTTTAACATGCTATAGTTGTGACAAAATTTCAATAAAGAACAGAATAGAAATCCCCGCATGTGAAAGTGTCTGTACATTAAATGGCTTAAGGTGTTCATGGGATTCTACAAGGCATTTGAAAAGGCACAGAGAAACTCAGAAAGTGGACAAATACAGTAAAAAGCAGCTAACATGctttttattttaactaggcaagtcagttaagaaccaattcttatttacaatgacggcctaggaagagtgggcagaatgacagatttttcccttgtcagctcggggattcgatctagcaacctttcgattactggctcaatgctctaaccactaggctacctgccgccccagttcATTGAACTGTCAAATTATGCAACTAGCCAAAAGGTACTTTTTTATCCCAACTTAAAATATTTGATAGAAAGTACTGCATTTGCCCCTTCATAGAAACCTACCTAACCATAAATATAGTAATGTATCTATTCTGTGCTAACTCAAATCAGCACAAAAGCAGCTATCATCATTTACACATAAGAGTGTAAAACTTGTCCTCTAAAACAGTGGGTTGAGTCTTTAGTTAAGGGCTGGCATTATTGAAAGCATAGACAAAAGATGCGCACAAAAAAATAGCAAAAGAAGCATGAAAGAATTACAGTATATAAATTCTACAAATACACCATTAAAGACAATACCTTGAAAATTGGtcactaaaatatatatttgttttaaaaGACAAAAAACATTAGTAATGTATTGGATATCCCCAAATCGAGAGATGGCCATGTCACGACGAGCTACAGTAGCAAAATAAAGACTGCAAACCATTTGTAAAGGTGCCTGTGGAGGACAGTCACAGAAAAGTTAGCgagggagagtgagacagacagactgagaatGAGACAGTgctgaggggaggggggtagagggaggaggtgCGTACTGCTTAGGCCATGTTTGGTAAGGTGGGGGGGGGTCCCTGTCCTGTCGGTCCTGGTAACTTGGGTCGAGTCTCACCACAACTTCTTCTTTTCGTCCATGGACACCCCACCGGGCCCCAGAGCCACAATCAGTAGCAGCCCACCGATCACCGACATGGTCTGGAAGAAGTCGTACTTGAGGAAGTCGTGCATGGGCTTGTAGGCGGGCACCATCCAGAAGGCATTGAAGTATACGTTGACGGCAAACAGCCACAACACCAGGGTGAGGGCGGCCAGCTTGGTCTTGAAGCCGATTGCCACCAGCACGATCAGAGCTGTGCCCACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584691 True 1414 lncRNA 0.42 2 48899401 48900834

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding upstream 370643 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 506394 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 539052 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 541067 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 567955 48327868 ~ 48331446 (+)
LOC110526072 LOC106587002 coding downstream 48158 48948617 ~ 49037542 (+)
cmlc1 myl4 coding downstream 161616 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 175823 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 245293 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 282457 49183291 ~ 49187334 (+)
G515460 NA non-coding upstream 100 48899096 ~ 48899301 (+)
G515447 NA non-coding upstream 2631 48895677 ~ 48896770 (+)
G515446 NA non-coding upstream 3835 48894917 ~ 48895566 (+)
G515346 NA non-coding upstream 174657 48724494 ~ 48724744 (+)
G515308 NA non-coding upstream 223843 48674884 ~ 48675558 (+)
G515821 NA non-coding downstream 39752 48940586 ~ 48941783 (+)
G515836 NA non-coding downstream 54275 48955109 ~ 48955421 (+)
G515839 NA non-coding downstream 57056 48957890 ~ 48958392 (+)
G515932 NA non-coding downstream 207512 49108346 ~ 49108615 (+)
G515189 LOC100135962 other upstream 311513 48532377 ~ 48587888 (+)
G515069 NA other upstream 947147 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1382691 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1570157 47303183 ~ 47329244 (+)
LOC110526066 LOC106584148 other downstream 332745 49233579 ~ 49260632 (+)
G516011 NA other downstream 404291 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 485680 49347319 ~ 49387212 (+)

Expression


Co-expression Network