G515821


Basic Information

Item Value
gene id G515821
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48940586 ~ 48941783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585098
ACATTCCTGCATTATACTTCTATTGGTCTATTTTAAAGCTAGGACTACAGTACACAGGCGGCAGGCAGAGGtggtccagtacagtaggtggcggtaatgtacCATAACGTTGATGCCAACTCTCGataaaccccacagaagaagAGGCAGAGATGACAACGGTAATGTGATTCCATACATTAAAACTAGTTAGATGGAGtttgccttctccctctctctccctgcagtctaGAACTGGAAAGCTGCAAGAATGAGTCATGTGGCTCGTGATGTTTCTTTGTGCACTACTAGCTCCCCAATTATGGCCATAGGGCTAAAAACATGGTATCACATTATACTTGTCAcggctttcctcctcctcttctgaggaggagcagcaaggatcggaccaatacgcagcgtggttagtgtccATGATACTTTAGTAATAACTGAACACGACTCAATCCAAAAATAACAGAGAAtgaatgaaaaccgaaacagtcctgaatggtGACACAAACAAtaaaacaggaaacaatcacccacgaaacacaagttGGAAAAGACAACCTAAGTATgaatctcaatcagagacaactaacgacacctgcctctgattgagaaccataccaggccaaacacaacatagaaaaacaaacatagaaaacccacccaactcacgccctgaccatactaaaacaaagacataacaaaataactaaggtcagaatgtgacaataCTTGTGTGCTAGGATGGTTTTTCTTTGTCAATACACCCAACAATAATAATTTGGCATATAACCCATACTATCTCAACTGTCAATAACTTTCACATTTATAATTGGATGTGTCATGAACCCATTGTGACAAAAATAACTGTAAGGTCAATTTCCTTACAGATCTTCAACAGCAAGCTCCTCTGGCACCCATGTGAGTTGATGTTGTCTACTGGATATTTGTTTACCTATCTGCcattaggatctggggcaccacCAGAGCAGTTCTTTAGAGTTACCACCTCTCAAAttacctatcacatctataaacaaattattaatcataacctcgtgtcatatcatcattctgaacagtcgtaacctccttgcatctgcaaaaacacaaaccttacttatgattcaatactacacaaattggtttaattatttatttactagctaactaaatggtaACAAGATAAAGATATACTTTAAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585098 True 1198 lncRNA 0.39 1 48940586 48941783

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding upstream 411828 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 547579 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 580237 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 582252 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 609140 48327868 ~ 48331446 (+)
LOC110526072 LOC106587002 coding downstream 7209 48948617 ~ 49037542 (+)
cmlc1 myl4 coding downstream 120667 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 134874 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 204344 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 241508 49183291 ~ 49187334 (+)
G515442 LOC106587003 non-coding upstream 39752 48899401 ~ 48900834 (+)
G515460 NA non-coding upstream 41285 48899096 ~ 48899301 (+)
G515447 NA non-coding upstream 43816 48895677 ~ 48896770 (+)
G515446 NA non-coding upstream 45020 48894917 ~ 48895566 (+)
G515346 NA non-coding upstream 215842 48724494 ~ 48724744 (+)
G515836 NA non-coding downstream 13326 48955109 ~ 48955421 (+)
G515839 NA non-coding downstream 16107 48957890 ~ 48958392 (+)
G515932 NA non-coding downstream 166563 49108346 ~ 49108615 (+)
G515897 NA non-coding downstream 220011 49161794 ~ 49162460 (+)
G515189 LOC100135962 other upstream 352698 48532377 ~ 48587888 (+)
G515069 NA other upstream 988332 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1423876 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 1611342 47303183 ~ 47329244 (+)
LOC110526066 LOC106584148 other downstream 291796 49233579 ~ 49260632 (+)
G516011 NA other downstream 363342 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 444731 49347319 ~ 49387212 (+)

Expression


Co-expression Network