Gene
RNA
| Item | Value |
|---|---|
| gene id | G516128 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 48955636 ~ 48955857 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU585459 | True | 222 | lncRNA | 0.46 | 1 | 48955636 | 48955857 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| surf4l | LOC106587003 | coding | downstream | 10760 | 48899344 ~ 48944876 (-) |
| LOC110526076 | LOC106587004 | coding | downstream | 205264 | 48672475 ~ 48750372 (-) |
| prdm12b | LOC106587007 | coding | downstream | 325248 | 48625747 ~ 48630388 (-) |
| c5 | c5 | coding | downstream | 330201 | 48551620 ~ 48625435 (-) |
| rab14 | LOC106587009 | coding | downstream | 414750 | 48535685 ~ 48540886 (-) |
| LOC110526068 | LOC106586971 | coding | upstream | 239331 | 49195188 ~ 49220181 (-) |
| serpind1 | LOC106603687 | coding | upstream | 277727 | 49233584 ~ 49240694 (-) |
| LOC118964899 | LOC106585521 | coding | upstream | 358368 | 49314225 ~ 49316393 (-) |
| LOC110512258 | LOC106585521 | coding | upstream | 360422 | 49316279 ~ 49320412 (-) |
| LOC110512256 | LOC106585521 | coding | upstream | 391001 | 49346858 ~ 49349193 (-) |
| G515822 | NA | non-coding | downstream | 13801 | 48941626 ~ 48941835 (-) |
| G515823 | NA | non-coding | downstream | 16742 | 48938577 ~ 48938894 (-) |
| G515819 | NA | non-coding | downstream | 17764 | 48937657 ~ 48937872 (-) |
| G515786 | NA | non-coding | downstream | 58945 | 48895592 ~ 48896691 (-) |
| G516181 | NA | non-coding | upstream | 65323 | 49021180 ~ 49021455 (-) |
| G516182 | NA | non-coding | upstream | 65694 | 49021551 ~ 49021782 (-) |
| G516183 | NA | non-coding | upstream | 89927 | 49045784 ~ 49063260 (-) |
| G516275 | NA | non-coding | upstream | 219194 | 49175051 ~ 49175317 (-) |
| G516257 | NA | non-coding | upstream | 228022 | 49183879 ~ 49187324 (-) |
| LOC118964892 | LOC106585477 | other | downstream | 575330 | 48375946 ~ 48387076 (-) |
| G515139 | LOC106585477 | other | downstream | 635048 | 48319747 ~ 48320588 (-) |
| LOC110512142 | LOC106585477 | other | downstream | 637229 | 48292846 ~ 48318495 (-) |
| G515122 | LOC106585477 | other | downstream | 690659 | 48263993 ~ 48264977 (-) |
| LOC118936342 | LOC106585521 | other | upstream | 423965 | 49379716 ~ 49385907 (-) |
| G516320 | LOC106585521 | other | upstream | 579358 | 49535215 ~ 49536285 (-) |
| LOC110515945 | LOC106585521 | other | upstream | 667192 | 49622196 ~ 49624916 (-) |
