G515839


Basic Information

Item Value
gene id G515839
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48957890 ~ 48958392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585116
aagtcggaagtttacatacactttggtcattaacttgtttttcaaccattccgcaaagttcttgttaacaaactatagttttggtaagtcggttaggacatctactttgtgcatcacacaagtaatttttccaacaattgtttacagacggattatttcactatcacaattccagtgggtcagaagtttacatacactaagttgacactgcctttaaacagcttggaaaattccagaaaattgtgtcatggctttagaagcttctgataggctaattgacataatttgagtcaattggaggtattgtggctgtatttcaaggccaaccttcaaactcagtgcttctttgcttgacatcatgtgaaaatcaaaagaaatcagccaagacctctacAAGTCGGAttcaaaaaattgtagacctctacaagtctgattcatccttgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaaaaatagtacagtgc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585116 True 503 lncRNA 0.37 1 48957890 48958392

Neighbor

gene id symbol gene type direction distance location
cntrl cntrl coding upstream 429132 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 564883 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 597541 48358853 ~ 48360349 (+)
LOC110514397 LOC106585521 coding upstream 599556 48357549 ~ 48358334 (+)
LOC118936658 LOC106585521 coding upstream 626444 48327868 ~ 48331446 (+)
cmlc1 myl4 coding downstream 104058 49062450 ~ 49063259 (+)
qsox2 qsox2 coding downstream 118265 49076657 ~ 49134305 (+)
LOC110526069 LOC106586970 coding downstream 187735 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 224899 49183291 ~ 49187334 (+)
LOC118964897 NA coding downstream 229783 49188175 ~ 49189807 (+)
G515836 NA non-coding upstream 2469 48955109 ~ 48955421 (+)
G515821 NA non-coding upstream 16107 48940586 ~ 48941783 (+)
G515442 LOC106587003 non-coding upstream 57056 48899401 ~ 48900834 (+)
G515460 NA non-coding upstream 58589 48899096 ~ 48899301 (+)
G515447 NA non-coding upstream 61120 48895677 ~ 48896770 (+)
LOC110526072 LOC106587002 non-coding downstream 75431 48948617 ~ 49037542 (+)
G515932 NA non-coding downstream 149954 49108346 ~ 49108615 (+)
G515897 NA non-coding downstream 203402 49161794 ~ 49162460 (+)
G515985 NA non-coding downstream 270777 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 274119 49232511 ~ 49232995 (+)
G515189 LOC100135962 other upstream 370002 48532377 ~ 48587888 (+)
G515069 NA other upstream 1005636 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1441180 47425001 ~ 47519480 (+)
G514665 NA other upstream 1637840 47306438 ~ 47320050 (+)
LOC110526066 LOC106584148 other downstream 275187 49233579 ~ 49260632 (+)
G516011 NA other downstream 346733 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 428122 49347319 ~ 49387212 (+)
barhl1a barhl1 other downstream 790796 49748788 ~ 49753260 (+)

Expression


Co-expression Network