G515932


Basic Information

Item Value
gene id G515932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49108346 ~ 49108615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585221
aaccatttatttgatcatcaagaacttcaagcaGAGCGGTTTccattgttgtgaagaaggcttcagggcgcccaagaaagtccagcaagcccCAGGACCATCTCCAaatgttgattcagctgcggtATCGGggtaccaccagtacagagcttgctcaggaatggcagcaggcaggtgtgagtgcatctgcaggcaggtgtgagt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585221 True 204 lncRNA 0.51 2 49108346 49108615

Neighbor

gene id symbol gene type direction distance location
cmlc1 myl4 coding upstream 45087 49062450 ~ 49063259 (+)
LOC110526072 LOC106587002 coding upstream 74256 48948617 ~ 49037542 (+)
cntrl cntrl coding upstream 579588 48419773 ~ 48528758 (+)
LOC110526080 LOC106585521 coding upstream 715339 48354613 ~ 48393007 (+)
LOC118964893 LOC106585521 coding upstream 747997 48358853 ~ 48360349 (+)
LOC110526069 LOC106586970 coding downstream 37512 49146127 ~ 49156002 (+)
edf1 edf1 coding downstream 74676 49183291 ~ 49187334 (+)
LOC118964897 NA coding downstream 79560 49188175 ~ 49189807 (+)
LOC110526066 LOC106584148 coding downstream 133424 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 194050 49302665 ~ 49303356 (+)
G515839 NA non-coding upstream 149954 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 152925 48955109 ~ 48955421 (+)
G515821 NA non-coding upstream 166563 48940586 ~ 48941783 (+)
G515442 LOC106587003 non-coding upstream 207512 48899401 ~ 48900834 (+)
G515897 NA non-coding downstream 53179 49161794 ~ 49162460 (+)
G515985 NA non-coding downstream 120554 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 123896 49232511 ~ 49232995 (+)
G516006 NA non-coding downstream 161999 49270614 ~ 49290474 (+)
G515189 LOC100135962 other upstream 520458 48532377 ~ 48587888 (+)
G515069 NA other upstream 1156092 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1591636 47425001 ~ 47519480 (+)
G514665 NA other upstream 1788296 47306438 ~ 47320050 (+)
G516011 NA other downstream 196510 49305125 ~ 49307140 (+)
LOC118964898 LOC106585477 other downstream 277899 49347319 ~ 49387212 (+)
barhl1a barhl1 other downstream 640573 49748788 ~ 49753260 (+)

Expression


Co-expression Network