G515897


Basic Information

Item Value
gene id G515897
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49161794 ~ 49162460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585177
atacttcccgaatgcgcTGTACATGGAGACTGTTTTGTGACCAAAAATAAGGTGTTAAATAtgtacaaaaaaattgaaaatgttctgttattcaatgcgtttgtatgggctaataatAGTAAGgccaaataaaattgttaatCAAACTGGGTCttgttttggaggacacatgactcgaccttcgcctctcccgagtttgtaggggagttgcagtgatgagacaagacaaaCTATCAATGGGATATCATGAAATTTgggagaaaaggggtaaaaaaatacatatttaacaTTGGtcatcaaatattatttgtttcatatatttttttatacatcaAGGGTTCttaaaattataataatttaaattaatatgaaataacaaaacaaaccttggtaaaacaattccatatacagTAGCTTAGTAGAATCCCCCCCATTGAGCCCCTGGCCCAGGCAATTCGACATTCAAAAGAAGTTACACCAATATGCCTCAATTCTACGGCTCAAATCATCTCATTATACGCTGAAGATATATCTCAATCCCTCCCAAATGCTTTGAAGATCATAAACAAATTCCACTCCAGCTCAAGTTATAAAATAAATCTAACTAAATCTCCCCTACTCCCCCTCAAGAACCTGAAAAGAGTACCCCAACTCTACTCTTGAATCC

Function

NR:

description
LINE-1 reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585177 True 667 lncRNA 0.35 1 49161794 49162460

Neighbor

gene id symbol gene type direction distance location
LOC110526069 LOC106586970 coding upstream 5792 49146127 ~ 49156002 (+)
qsox2 qsox2 coding upstream 27489 49076657 ~ 49134305 (+)
cmlc1 myl4 coding upstream 98535 49062450 ~ 49063259 (+)
LOC110526072 LOC106587002 coding upstream 127704 48948617 ~ 49037542 (+)
cntrl cntrl coding upstream 633036 48419773 ~ 48528758 (+)
edf1 edf1 coding downstream 20831 49183291 ~ 49187334 (+)
LOC118964897 NA coding downstream 25715 49188175 ~ 49189807 (+)
LOC110526066 LOC106584148 coding downstream 79579 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 140205 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 199570 49347319 ~ 49387212 (+)
G515932 NA non-coding upstream 53179 49108346 ~ 49108615 (+)
G515839 NA non-coding upstream 203402 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 206373 48955109 ~ 48955421 (+)
G515821 NA non-coding upstream 220011 48940586 ~ 48941783 (+)
G515985 NA non-coding downstream 66709 49229169 ~ 49230070 (+)
G515986 NA non-coding downstream 70051 49232511 ~ 49232995 (+)
G516006 NA non-coding downstream 108154 49270614 ~ 49290474 (+)
G516012 NA non-coding downstream 121255 49283715 ~ 49335105 (+)
G515189 LOC100135962 other upstream 573906 48532377 ~ 48587888 (+)
G515069 NA other upstream 1209540 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1645084 47425001 ~ 47519480 (+)
G514665 NA other upstream 1841744 47306438 ~ 47320050 (+)
G516011 NA other downstream 142665 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 586728 49748788 ~ 49753260 (+)

Expression


Co-expression Network