G515985


Basic Information

Item Value
gene id G515985
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49229169 ~ 49230070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585285
ggaatgacatttattgaatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagccccctcaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcacattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatatttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttacattttggtttcatctgaccagagcatcttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctctggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggactcttggctgcatctctgatcagtcttctccttgtat

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585285 True 902 lncRNA 0.42 1 49229169 49230070

Neighbor

gene id symbol gene type direction distance location
LOC118964897 NA coding upstream 39362 49188175 ~ 49189807 (+)
edf1 edf1 coding upstream 41835 49183291 ~ 49187334 (+)
LOC110526069 LOC106586970 coding upstream 73167 49146127 ~ 49156002 (+)
qsox2 qsox2 coding upstream 94864 49076657 ~ 49134305 (+)
cmlc1 myl4 coding upstream 165910 49062450 ~ 49063259 (+)
LOC110526066 LOC106584148 coding downstream 11969 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 72595 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 131960 49347319 ~ 49387212 (+)
LOC118936463 LOC106585477 coding downstream 288522 49518592 ~ 49522715 (+)
LOC118965033 LOC106585477 coding downstream 322959 49553029 ~ 49566639 (+)
G515897 NA non-coding upstream 66709 49161794 ~ 49162460 (+)
G515932 NA non-coding upstream 120554 49108346 ~ 49108615 (+)
LOC110526072 LOC106587002 non-coding upstream 191627 48948617 ~ 49037542 (+)
G515839 NA non-coding upstream 270777 48957890 ~ 48958392 (+)
G515836 NA non-coding upstream 273748 48955109 ~ 48955421 (+)
G515986 NA non-coding downstream 2441 49232511 ~ 49232995 (+)
G516006 NA non-coding downstream 40544 49270614 ~ 49290474 (+)
G516012 NA non-coding downstream 53645 49283715 ~ 49335105 (+)
G516038 LOC106585477 non-coding downstream 102970 49333040 ~ 49333982 (+)
G515189 LOC100135962 other upstream 641281 48532377 ~ 48587888 (+)
G515069 NA other upstream 1276915 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1712459 47425001 ~ 47519480 (+)
G516011 NA other downstream 75055 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 519118 49748788 ~ 49753260 (+)
LOC118964907 NA other downstream 1490331 50719208 ~ 50743120 (+)

Expression


Co-expression Network