G515986


Basic Information

Item Value
gene id G515986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49232511 ~ 49232995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585286
gaaatgtagtattggtgcgtgtaaaagatctgcgggctgccggcttgctgcgggccggttctaataataaatcaagatcatcccaggggccgtaaaaaaccttcttgcgggccggatgtggcccgcgggccttgactctgacatatgtggtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgtctggtgtgttccttgttcttcatgatgctctctgcgcttttaacagacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585286 True 485 lncRNA 0.46 1 49232511 49232995

Neighbor

gene id symbol gene type direction distance location
LOC118964897 NA coding upstream 42704 49188175 ~ 49189807 (+)
edf1 edf1 coding upstream 45177 49183291 ~ 49187334 (+)
LOC110526069 LOC106586970 coding upstream 76509 49146127 ~ 49156002 (+)
qsox2 qsox2 coding upstream 98206 49076657 ~ 49134305 (+)
cmlc1 myl4 coding upstream 169252 49062450 ~ 49063259 (+)
LOC110526066 LOC106584148 coding downstream 9044 49233579 ~ 49260632 (+)
LOC118964903 NA coding downstream 69670 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 129035 49347319 ~ 49387212 (+)
LOC118936463 LOC106585477 coding downstream 285597 49518592 ~ 49522715 (+)
LOC118965033 LOC106585477 coding downstream 320034 49553029 ~ 49566639 (+)
G515985 NA non-coding upstream 2441 49229169 ~ 49230070 (+)
G515897 NA non-coding upstream 70051 49161794 ~ 49162460 (+)
G515932 NA non-coding upstream 123896 49108346 ~ 49108615 (+)
LOC110526072 LOC106587002 non-coding upstream 194969 48948617 ~ 49037542 (+)
G515839 NA non-coding upstream 274119 48957890 ~ 48958392 (+)
G516006 NA non-coding downstream 37619 49270614 ~ 49290474 (+)
G516012 NA non-coding downstream 50720 49283715 ~ 49335105 (+)
G516038 LOC106585477 non-coding downstream 100045 49333040 ~ 49333982 (+)
G515189 LOC100135962 other upstream 644623 48532377 ~ 48587888 (+)
G515069 NA other upstream 1280257 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 1715801 47425001 ~ 47519480 (+)
G516011 NA other downstream 72130 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 516193 49748788 ~ 49753260 (+)
LOC118964907 NA other downstream 1487406 50719208 ~ 50743120 (+)

Expression


Co-expression Network