G516006


Basic Information

Item Value
gene id G516006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49270614 ~ 49290474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585306
tcggtatcatcagatcagagaatattgtttctcataccCTTCCCCCAGGTCtgtgtttctttccaaatcatgtccaatcaattgaatttaccacaggactccaaacaagttgtagaaacatctcaagtatgatcaatggaaacaggatgcaactgagctcaatttcgagtctcatagcaaagggtctcaatAATTATTTAAACAAGgtaattctgtttttattcttataaatttgcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585306 True 238 lncRNA 0.35 2 49270614 49290474

Neighbor

gene id symbol gene type direction distance location
LOC110526066 LOC106584148 coding upstream 24114 49233579 ~ 49260632 (+)
LOC118964897 NA coding upstream 80807 49188175 ~ 49189807 (+)
edf1 edf1 coding upstream 83280 49183291 ~ 49187334 (+)
LOC110526069 LOC106586970 coding upstream 114612 49146127 ~ 49156002 (+)
qsox2 qsox2 coding upstream 136309 49076657 ~ 49134305 (+)
LOC118964903 NA coding downstream 12191 49302665 ~ 49303356 (+)
LOC118964898 LOC106585477 coding downstream 71556 49347319 ~ 49387212 (+)
LOC118936463 LOC106585477 coding downstream 228118 49518592 ~ 49522715 (+)
LOC118965033 LOC106585477 coding downstream 262555 49553029 ~ 49566639 (+)
cfap77 cfap77 coding downstream 383667 49674141 ~ 49747277 (+)
G515986 NA non-coding upstream 37619 49232511 ~ 49232995 (+)
G515985 NA non-coding upstream 40544 49229169 ~ 49230070 (+)
G515897 NA non-coding upstream 108154 49161794 ~ 49162460 (+)
G515932 NA non-coding upstream 161999 49108346 ~ 49108615 (+)
G516038 LOC106585477 non-coding downstream 42566 49333040 ~ 49333982 (+)
G516047 NA non-coding downstream 67287 49357761 ~ 49359016 (+)
G516050 NA non-coding downstream 76345 49366819 ~ 49411934 (+)
G516029 NA non-coding downstream 213058 49503532 ~ 49506083 (+)
LOC110526072 LOC106587002 other upstream 316323 48948617 ~ 49037542 (+)
G515189 LOC100135962 other upstream 682726 48532377 ~ 48587888 (+)
G515069 NA other upstream 1318360 47950006 ~ 47952254 (+)
G516011 NA other downstream 14651 49305125 ~ 49307140 (+)
barhl1a barhl1 other downstream 458714 49748788 ~ 49753260 (+)
LOC118964907 NA other downstream 1429927 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1621354 50911697 ~ 50922106 (+)

Expression


Co-expression Network