G516038 (LOC106585477)


Basic Information

Item Value
gene id G516038
gene name LOC106585477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49333040 ~ 49333982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585360
ccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacggagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagcgttccaagagaggaaacaaaaaggactgccattcagtccaggaccagactgagattccctctactgatggacattgcatagctccagttgGAGAGggttctccctccatatctcagcctgtcaaaaaacgatccttgattgtcagggtcttttcagcaatgatgaagccattcaggcgcttcaccaagaagaacctgtaacctgttacgctgcatgaagaactacttttgtaacagcaagacttttgacaagaggaatttctgcatgtctaacctttcaaagtctatttgatcaaataaatgccattgattttacaagaatttcaagtgttttggaagattgataatactgaagcagattttctcagagaaatgcactagttcccccttggttacacatttattgtgcagtttttgagttggcaggacttggg

Function

NR:

description
uncharacterized protein LOC110512255 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585360 True 595 lncRNA 0.45 3 49333040 49333982

Neighbor

gene id symbol gene type direction distance location
LOC118964903 NA coding upstream 29684 49302665 ~ 49303356 (+)
LOC110526066 LOC106584148 coding upstream 86540 49233579 ~ 49260632 (+)
LOC118964897 NA coding upstream 143233 49188175 ~ 49189807 (+)
edf1 edf1 coding upstream 145706 49183291 ~ 49187334 (+)
LOC110526069 LOC106586970 coding upstream 177038 49146127 ~ 49156002 (+)
LOC118964898 LOC106585477 coding downstream 28048 49347319 ~ 49387212 (+)
LOC118936463 LOC106585477 coding downstream 184610 49518592 ~ 49522715 (+)
LOC118965033 LOC106585477 coding downstream 219047 49553029 ~ 49566639 (+)
cfap77 cfap77 coding downstream 340159 49674141 ~ 49747277 (+)
barhl1a barhl1 coding downstream 414806 49748788 ~ 49753260 (+)
G516006 NA non-coding upstream 42566 49270614 ~ 49290474 (+)
G515986 NA non-coding upstream 100045 49232511 ~ 49232995 (+)
G515985 NA non-coding upstream 102970 49229169 ~ 49230070 (+)
G515897 NA non-coding upstream 170580 49161794 ~ 49162460 (+)
G516047 NA non-coding downstream 23779 49357761 ~ 49359016 (+)
G516050 NA non-coding downstream 32837 49366819 ~ 49411934 (+)
G516029 NA non-coding downstream 169550 49503532 ~ 49506083 (+)
G516089 NA non-coding downstream 213999 49547981 ~ 49565332 (+)
G516011 NA other upstream 25900 49305125 ~ 49307140 (+)
LOC110526072 LOC106587002 other upstream 378749 48948617 ~ 49037542 (+)
G515189 LOC100135962 other upstream 745152 48532377 ~ 48587888 (+)
LOC118964907 NA other downstream 1386419 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1577846 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2944511 52277694 ~ 52279409 (+)

Expression


Co-expression Network