G516320 (LOC106585521)


Basic Information

Item Value
gene id G516320
gene name LOC106585521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49535215 ~ 49536285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585689
ACCAATCATAAatgttgttgtgctggtgtggtaggtgtgattgttatcatcatgaggttgttcagctgtgacattttttaaaacatgtttttctctttAAATACTTAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCA
>TU585690
gtAATGAGAATTCTAACAGAAATCCAAACCCCAGCAGAAGATTACCCAGTTGACGTCACACGCAAGTCACAAGACCTGATCCCTAAAGTTATGGAGGTcttctgtgcatggtcaggctgctctgagacaCAAGCCTATCCAGAGAACTTGAGGATTCATAAAGTCTACAGAGTCGTCTATAAAAATCTGTTGGAGGAGTTTGGCTCGGAGAAAATCCTCCAACAggccgtgtcgactcaggactcTTCATTTGATAGGATTCTTGTCAAGTCTTTGAGTGAAGCGCTTCTCCACAGATGTAATGAGGCATTGAGGGCAGCCTCAAGAACATCAGTCAAAACCACCGGGCCTAAGGCTCTTCCACTGGCTGAGGATGTGAGGGCTAGCAGCGGGAAACTATCTTTTCTACAAAGGCTGGTCAGGCTGACAAGCAACTTAAAGCTATTCAAGAAGGGGAACAAGAAGGATTCCCACCGCTCTGAATCAGAACAAGTACAGACCACTGCTGAAGATGGCATGCtGCCCAGCATAGTGCCACATGCTGCCATGTCTGCACTGCCAAAGGATCTCCCCGCCAGCTCCCAACAGGAGACGCCTCACAAACGTCCACTTCTCGTCAGGATGTTTTCTGCCA

Function

NR:

description
uncharacterized protein LOC110512256

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585689 False 301 lncRNA 0.46 2 49535215 49535760
TU585690 True 634 TUCP 0.49 3 49535215 49536285

Neighbor

gene id symbol gene type direction distance location
LOC118964904 LOC106585521 coding downstream 35563 49496295 ~ 49499652 (-)
LOC118964900 LOC106585521 coding downstream 65948 49465910 ~ 49469267 (-)
LOC118964901 LOC106585521 coding downstream 103104 49427056 ~ 49432111 (-)
LOC118964902 LOC106585521 coding downstream 111395 49422429 ~ 49423820 (-)
LOC118936342 LOC106585521 coding downstream 149308 49379716 ~ 49385907 (-)
LOC118965034 LOC106585521 coding upstream 33312 49568244 ~ 49571133 (-)
LOC118964906 LOC106585521 coding upstream 56565 49592325 ~ 49594185 (-)
LOC118964905 LOC106585521 coding upstream 58604 49594364 ~ 49600187 (-)
LOC110515945 LOC106585521 coding upstream 86436 49622196 ~ 49624916 (-)
ddx31 ddx31 coding upstream 223869 49759629 ~ 49813236 (-)
G516386 NA non-coding downstream 30833 49471431 ~ 49504382 (-)
G516384 NA non-coding downstream 40251 49463943 ~ 49494964 (-)
G516369 NA non-coding downstream 115830 49401841 ~ 49419385 (-)
G516364 NA non-coding downstream 164166 49367999 ~ 49371049 (-)
G516401 NA non-coding upstream 29347 49565107 ~ 49589137 (-)
G516452 NA non-coding upstream 136199 49671959 ~ 49672168 (-)
LOC110512256 LOC106585521 other downstream 186079 49346858 ~ 49349193 (-)
LOC110512258 LOC106585521 other downstream 214803 49316279 ~ 49320412 (-)
prdm12b LOC106587007 other downstream 904910 48625747 ~ 48630388 (-)
LOC118964892 LOC106585477 other downstream 1154909 48375946 ~ 48387076 (-)
G517777 LOC106587028 other upstream 1109603 50636549 ~ 50740638 (-)
G517877 NA other upstream 1376054 50911814 ~ 50922098 (-)
LOC110526143 LOC106587046 other upstream 2032218 51563139 ~ 51643817 (-)
G520661 LOC106587056 other upstream 3606455 53142215 ~ 53162922 (-)

Expression


Co-expression Network