G516089


Basic Information

Item Value
gene id G516089
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49547981 ~ 49565332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585416
caggagttggcggatgctttagtccaggactgggaggagatccctcaggagaccatctgccacctcatcaggagcatgcccaggcgttgtagggaggaggtcatacaggcacgtggaggccacacacactactgagcctcattttgacttgttttaaggacattacatcaaagttggatcagcctgtagtgtggttttccactttaattttgagtgtaactccaaatccagacctccatgggttg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585416 True 245 lncRNA 0.50 2 49547981 49565332

Neighbor

gene id symbol gene type direction distance location
LOC118936463 LOC106585477 coding upstream 25266 49518592 ~ 49522715 (+)
LOC118964898 LOC106585477 coding upstream 161230 49347319 ~ 49387212 (+)
LOC118964903 NA coding upstream 244625 49302665 ~ 49303356 (+)
LOC110526066 LOC106584148 coding upstream 301481 49233579 ~ 49260632 (+)
LOC118964897 NA coding upstream 358174 49188175 ~ 49189807 (+)
cfap77 cfap77 coding downstream 108809 49674141 ~ 49747277 (+)
barhl1a barhl1 coding downstream 183456 49748788 ~ 49753260 (+)
spaca9 NA coding downstream 330516 49895848 ~ 49897364 (+)
grin1b LOC106587016 coding downstream 383306 49948638 ~ 50001016 (+)
kazald3 LOC106587018 coding downstream 485872 50051204 ~ 50054481 (+)
G516029 NA non-coding upstream 41898 49503532 ~ 49506083 (+)
G516050 NA non-coding upstream 136047 49366819 ~ 49411934 (+)
G516047 NA non-coding upstream 188965 49357761 ~ 49359016 (+)
G516012 NA non-coding upstream 212876 49283715 ~ 49335105 (+)
G516101 NA non-coding downstream 2764 49568096 ~ 49592137 (+)
G516025 LOC106585477 non-coding downstream 34944 49600276 ~ 49645732 (+)
G516441 NA non-coding downstream 102917 49668249 ~ 49668546 (+)
G516443 NA non-coding downstream 104408 49669740 ~ 49669942 (+)
G516489 NA non-coding downstream 148253 49713585 ~ 49761610 (+)
G516011 NA other upstream 240841 49305125 ~ 49307140 (+)
edf1 edf1 other upstream 360658 49183291 ~ 49187334 (+)
LOC110526072 LOC106587002 other upstream 593690 48948617 ~ 49037542 (+)
LOC118964907 NA other downstream 1155069 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1346496 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2713161 52277694 ~ 52279409 (+)
G519603 NA other downstream 3086608 52651940 ~ 52655297 (+)

Expression


Co-expression Network