G516025 (LOC106585477)


Basic Information

Item Value
gene id G516025
gene name LOC106585477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49600276 ~ 49645732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU585336
cgccactgccacgaaggtagcaccagttagccgtgagccaggcgcatctccctgcTAGCATTCTAAATTCTATCTGCCCCccaccgcaccaccacgactggtctgccgacgaatactccatccgctgtgccttcaaccggcctccgtcggagggctactaactttaaacgcagTGTAGCCCGCGTGCTAGCGTAATGGCGCCTTCCCTGTACCATCTACTGCTGCCTTCTGGACACTGttatcacttggctacatagctgatgcctgctggactgtcgattaatcacgAGCGTGAAATGGGAGGATCCCCCGGATGACCAAAATAAAGTCGTGGAGAACATGAAGGATGAAACAGAGACACATGAGACCAACaagaacaggacaggaggcaagccaatggagagtgattcagcagggcatgaaaaataatCTCACATTCGAGCAGCTCTCCATGCTGTGTCTGAAGATTGTTAAAGTCGTGACCCAGACAGCCCT
>TU585333
CCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacggagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagcgttccaagagaggaaacaaaaaggactgccattcagtccaagaccagactgagattccctctactgatggacattgcatagCTCCAGTTGGAGgggtttctccctccatatctcagccTGTCAAAAAACGATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTGTTACGCTGCATGAAGAACTACTTTTGTAACAGCAAGACTTTTGACAAGAG

Function

NR:

description
uncharacterized protein LOC110512255 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU585336 False 495 lncRNA 0.53 4 49600276 49604284
TU585333 True 452 lncRNA 0.49 3 49644905 49645732

Neighbor

gene id symbol gene type direction distance location
LOC118965033 LOC106585477 coding upstream 33637 49553029 ~ 49566639 (+)
LOC118936463 LOC106585477 coding upstream 77561 49518592 ~ 49522715 (+)
LOC118964898 LOC106585477 coding upstream 213525 49347319 ~ 49387212 (+)
LOC118964903 NA coding upstream 296920 49302665 ~ 49303356 (+)
LOC110526066 LOC106584148 coding upstream 353776 49233579 ~ 49260632 (+)
cfap77 cfap77 coding downstream 28409 49674141 ~ 49747277 (+)
barhl1a barhl1 coding downstream 103056 49748788 ~ 49753260 (+)
spaca9 NA coding downstream 250116 49895848 ~ 49897364 (+)
grin1b LOC106587016 coding downstream 302906 49948638 ~ 50001016 (+)
kazald3 LOC106587018 coding downstream 405472 50051204 ~ 50054481 (+)
G516101 NA non-coding upstream 8139 49568096 ~ 49592137 (+)
G516096 NA non-coding upstream 16716 49559696 ~ 49583560 (+)
G516094 NA non-coding upstream 18204 49558180 ~ 49582072 (+)
G516093 NA non-coding upstream 32509 49557969 ~ 49567767 (+)
G516089 NA non-coding upstream 34944 49547981 ~ 49565332 (+)
G516441 NA non-coding downstream 22517 49668249 ~ 49668546 (+)
G516443 NA non-coding downstream 24008 49669740 ~ 49669942 (+)
G516489 NA non-coding downstream 67853 49713585 ~ 49761610 (+)
G516628 tsc1 non-coding downstream 251704 49897436 ~ 49899671 (+)
G516011 NA other upstream 293136 49305125 ~ 49307140 (+)
edf1 edf1 other upstream 412953 49183291 ~ 49187334 (+)
LOC110526072 LOC106587002 other upstream 645985 48948617 ~ 49037542 (+)
LOC118964907 NA other downstream 1074669 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1266096 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2632761 52277694 ~ 52279409 (+)
G519603 NA other downstream 3006208 52651940 ~ 52655297 (+)

Expression


Co-expression Network