G516628 (tsc1)


Basic Information

Item Value
gene id G516628
gene name tsc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49897436 ~ 49899671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU586031
TTGATTTATATTCAGTTCATTTTTCCCCTTTTTGTTTTCAGAACATTTGTAAATCAGAACTGTCTTAACATACCGTCAGATTCACTGTACCATAGTTTCCTCATGCCGATGGTGTTTAACATTGATTTACATGCTTGACAACAAAAGATATGGGGAGAAAAAAGGAACACTTGAATTGACACCAGGATCTTGGACAGAGACCATGCTTTGAGGATAACAGCTGGAGATGGGTAATACTGACTTCCATGGATATGTGACTTAACTGACTAGCTTGCAAGCCCTGATCCTGAGTAGGGGATGGAACAATGATTGTCACCTTAGATGACAATTGACTATATGGCAACAGAAACTCACAATATGTCCATGTTAAGAACTACATTGTGACCTGATTCACTTTAAAGGCATTGAGTGAGGAAGGACCTCTATGAAGAGGGACATATACCTGGCATAGCTTCAATGCAAAGACATCAAGAGCGCCATCAGAGTCCCACTGCAGGAATTCTGGCAGTTGTGTGCAGCCATCAAGGCACTGAATATCCAAAAGAACAGTCCTCTCAGGCCTCTAGCCTAGACAAAAATAATGCAGTGATCCACATCAACTTGATCAATAAACCCCCAAAAAGCAAGATGGATGCCACGTGGCACATTTAACTCAAGAGAATGTATGAGAATTAACAAACTCTGGTCTAGGGTGTTATTGCACGTTCCTCCACTACTGCAGGAACACGACCTGAGCTAGAGATTTAGCTTAAACCTAGGCAAGATGCGTTATTGCTGTAAAACTTCATTGTATGGTGGGATCATGCCCATTCAATCAACAAGACAAAATAAAATTGTTACTTGATACTCTAAGCTCTCTTTAGCTGGTTATAAATTATAACTAATTATTGCAATAACTTTAGTACCTATTTGTAGAGCTATATGTGTTAAAACAAGAGGCACTCAGTGTTTTGGGGAGGGAAATGTGATGGAACAACCCAAAAAGTGTTCTGAAAAGCTGAGGCTGTGAGGCCTTTGACCAAGCAGCAAAAAAAACAAGATGAATCCATTTGAGAAAAGTATTGCACTTGTGAGTAGGACCCTCCGAACCCTACAGAAAGTTCAGGCCATTCTAGATTGGGGTGTGCCAAAACCATAAATAAATAGCTTATTAAAACATCTAACAAAAGATTCTTGCTCGTTTTCCTGTTGCTGTTATTCGTTTTACATCACACAGACCGACGTAGCCTCAATATATAGATTTACACACCCAATAGACGTTCTCTGTCGACTCGCTGCTCTCCTCACCGACGACCAGGCTGTGAGAGAGACTACTGAGCTGGGTGTCCTCATCCCCGTCACACTGGCTATCGCTTTTGTTGCAGAACAGCTCTCGGGCGTGCATTCCCAGGAAGCTCTTGGCACTGGGGTAGGTACCCACAGTGAAGGGGGTGCCAGCGGGGGATAGGGAAAGCGGAAAGGCGGCCAGGTGGgtaggggacatctctgacaggaGAGGGGGCTGTTTCAGACTGCCGTTGAGGGTCACCGAGGTAGTGGACTGAGCTCCACCCCCGGGTGGTAAAGTGCCTCCGTTGCCAGGCGGCCACGCTTGGGTGCGTCGGTCAGAGCTGCCCTGAGCAGTTGGCACAGTTCTGCTACTGCTGC

Function

symbol description
tsc1 Enables several functions, including chaperone binding activity; heat shock protein binding activity; and protein N-terminus binding activity. Involved in several processes, including activation of GTPase activity; negative regulation of ATPase activity; and regulation of cellular protein metabolic process. Located in several cellular components, including cell cortex; lamellipodium; and lipid droplet. Part of TSC1-TSC2 complex and chaperone complex. Colocalizes with actin filament. Implicated in intellectual disability; lymphangioleiomyomatosis; tuberous sclerosis; and tuberous sclerosis 1. Biomarker of breast cancer and pleomorphic xanthoastrocytoma.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU586031 True 1647 lncRNA 0.45 2 49897436 49899671

Neighbor

gene id symbol gene type direction distance location
spaca9 NA coding upstream 72 49895848 ~ 49897364 (+)
barhl1a barhl1 coding upstream 144176 49748788 ~ 49753260 (+)
cfap77 cfap77 coding upstream 150159 49674141 ~ 49747277 (+)
LOC118965033 LOC106585477 coding upstream 330797 49553029 ~ 49566639 (+)
LOC118936463 LOC106585477 coding upstream 374721 49518592 ~ 49522715 (+)
grin1b LOC106587016 coding downstream 48967 49948638 ~ 50001016 (+)
kazald3 LOC106587018 coding downstream 151533 50051204 ~ 50054481 (+)
rsph14 rsph14 coding downstream 172655 50072326 ~ 50086959 (+)
LOC110526093 dmtn coding downstream 207121 50106792 ~ 50208464 (+)
si:dkey-220o5.5 LOC106587021 coding downstream 298671 50198342 ~ 50299370 (+)
G516489 NA non-coding upstream 135826 49713585 ~ 49761610 (+)
G516443 NA non-coding upstream 227494 49669740 ~ 49669942 (+)
G516441 NA non-coding upstream 228890 49668249 ~ 49668546 (+)
G516025 LOC106585477 non-coding upstream 251704 49600276 ~ 49645732 (+)
G516649 NA non-coding downstream 28738 49928409 ~ 49928968 (+)
G516659 NA non-coding downstream 36648 49936319 ~ 49936792 (+)
G516661 NA non-coding downstream 39275 49938946 ~ 49939253 (+)
G516664 NA non-coding downstream 41749 49941420 ~ 49941621 (+)
G516674 NA non-coding downstream 59641 49959312 ~ 49960013 (+)
LOC118964898 LOC106585477 other upstream 510224 49347319 ~ 49387212 (+)
G516011 NA other upstream 590296 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 650983 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 710113 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 820730 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 1012157 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2378822 52277694 ~ 52279409 (+)
G519603 NA other downstream 2752269 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 4026271 53925942 ~ 53955130 (+)

Expression


Co-expression Network