G516659


Basic Information

Item Value
gene id G516659
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49936319 ~ 49936792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU586088
tgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactctgttacgccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcgtgtggaaggctacccgaaacatttgacccaagttaagcaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccacagggaatgtgatgaaagtgaAGAAATcactctattattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacactgAATTTTTAAAAggtacatgtcaggaattgtgaaaaactgagtttaaatctatttggctaaggtgtatgtaaacttccgacttcaactgtacgttatataggtatgcacggtaGCTTTGACAGTGGTTTTTAACTTCGtcattaaactagacatcgggccgatactgacg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU586088 True 474 lncRNA 0.40 1 49936319 49936792

Neighbor

gene id symbol gene type direction distance location
spaca9 NA coding upstream 38955 49895848 ~ 49897364 (+)
barhl1a barhl1 coding upstream 183059 49748788 ~ 49753260 (+)
cfap77 cfap77 coding upstream 189042 49674141 ~ 49747277 (+)
LOC118965033 LOC106585477 coding upstream 369680 49553029 ~ 49566639 (+)
LOC118936463 LOC106585477 coding upstream 413604 49518592 ~ 49522715 (+)
grin1b LOC106587016 coding downstream 11846 49948638 ~ 50001016 (+)
kazald3 LOC106587018 coding downstream 114412 50051204 ~ 50054481 (+)
rsph14 rsph14 coding downstream 135534 50072326 ~ 50086959 (+)
LOC110526093 dmtn coding downstream 170000 50106792 ~ 50208464 (+)
si:dkey-220o5.5 LOC106587021 coding downstream 261550 50198342 ~ 50299370 (+)
G516649 NA non-coding upstream 7351 49928409 ~ 49928968 (+)
G516628 tsc1 non-coding upstream 36648 49897436 ~ 49899671 (+)
G516489 NA non-coding upstream 174709 49713585 ~ 49761610 (+)
G516443 NA non-coding upstream 266377 49669740 ~ 49669942 (+)
G516661 NA non-coding downstream 2154 49938946 ~ 49939253 (+)
G516664 NA non-coding downstream 4628 49941420 ~ 49941621 (+)
G516674 NA non-coding downstream 22520 49959312 ~ 49960013 (+)
G516691 NA non-coding downstream 69489 50006281 ~ 50006631 (+)
G516692 NA non-coding downstream 73348 50010140 ~ 50010708 (+)
LOC118964898 LOC106585477 other upstream 549107 49347319 ~ 49387212 (+)
G516011 NA other upstream 629179 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 689866 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 748996 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 783609 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 975036 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2341701 52277694 ~ 52279409 (+)
G519603 NA other downstream 2715148 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3989150 53925942 ~ 53955130 (+)

Expression


Co-expression Network