G516674


Basic Information

Item Value
gene id G516674
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 49959312 ~ 49960013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU586103
gtcTAATGTAAATTGCTCGTGTTTCCTAGTCCAAgaaagtatcttcttcttattggtttcctttagtagtggtttctttgcagcaatttcacCATGAAcgtctgattcatgcagtctcctctgaatagttgatgttgagatatgtctgttagagttaactctgggtcttccactcctgtggcggtcctcataagagccagtttcatcatagcgattgatgttttttacgactgcacttaaaaaaacgttcaaagttcttgacattttacacattaactgaccttcatgtcttaaagtatggatggactgtcgtttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaataaggctatcttctgtataccacccctatcttgtcacagcacaaattattgtctcaaacgcatcaagaaggaaagaaattccacaaatcaatttgtgaagctggttgagataattccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttaaagaatatcaaacataaaatatattttgatttgtttaacacttctttggttactacatgattccatatgtgttatttactagttttgatgtcttcactattattgtacaatttagaaaatagt

Function

NR:

description
hypothetical protein EH28_10426

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU586103 True 654 lncRNA 0.36 2 49959312 49960013

Neighbor

gene id symbol gene type direction distance location
spaca9 NA coding upstream 61948 49895848 ~ 49897364 (+)
barhl1a barhl1 coding upstream 206052 49748788 ~ 49753260 (+)
cfap77 cfap77 coding upstream 212035 49674141 ~ 49747277 (+)
LOC118965033 LOC106585477 coding upstream 392673 49553029 ~ 49566639 (+)
LOC118936463 LOC106585477 coding upstream 436597 49518592 ~ 49522715 (+)
kazald3 LOC106587018 coding downstream 91191 50051204 ~ 50054481 (+)
rsph14 rsph14 coding downstream 112313 50072326 ~ 50086959 (+)
LOC110526093 dmtn coding downstream 146779 50106792 ~ 50208464 (+)
si:dkey-220o5.5 LOC106587021 coding downstream 238329 50198342 ~ 50299370 (+)
fam160b2 LOC106587022 coding downstream 340069 50300082 ~ 50312773 (+)
G516664 NA non-coding upstream 17691 49941420 ~ 49941621 (+)
G516661 NA non-coding upstream 20059 49938946 ~ 49939253 (+)
G516659 NA non-coding upstream 22520 49936319 ~ 49936792 (+)
G516649 NA non-coding upstream 30344 49928409 ~ 49928968 (+)
G516628 tsc1 non-coding upstream 59641 49897436 ~ 49899671 (+)
G516691 NA non-coding downstream 46268 50006281 ~ 50006631 (+)
G516692 NA non-coding downstream 50127 50010140 ~ 50010708 (+)
G516696 NA non-coding downstream 53598 50013611 ~ 50013812 (+)
G516700 NA non-coding downstream 65504 50025517 ~ 50025776 (+)
G516725 NA non-coding downstream 89698 50049711 ~ 50050023 (+)
LOC118964898 LOC106585477 other upstream 572100 49347319 ~ 49387212 (+)
G516011 NA other upstream 652172 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 712859 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 771989 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 760388 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 951815 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2318480 52277694 ~ 52279409 (+)
G519603 NA other downstream 2691927 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3965929 53925942 ~ 53955130 (+)

Expression


Co-expression Network