XLOC_024360


Basic Information

Item Value
gene id XLOC_024360
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 287659 ~ 294609 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049068
CATAAATGCATAGTTTGTCTTGGGTGACAAATGGCTTTGTTTCTAAAGGAGGGAATTCAGGTCCGAGttttacaataattaattaattctttattcAAAATGAGCTTCCAGATCCAGTTTGTAGATGAAGTCCATGAAGGCCGAGCACCGCTGACAGTGACTGTGGCGAACACAGAGGAGGAGTTCAGGAACACCACAGTTAAAGACCTGCAGAGAAAACTCATCCCAGAAGACGAGTATGAAAACACCATTCTGGTCTATGAATGTTCAACGCTGAAGAGAAATCGCACACTCGGCTCCTATAACATTCAACATGGCTCTGTTATTAGAGGCTTATGGCATGGAGAACCCTTTGTTGGGAGCTGTGGACCAATGTCCTCTGACCATGAGTATGAAGGATATTTtccatatgatgatgatgattatgatgaccCCAACGTCATCTCCAGGAGGGAGTCTATGGAGCTTGTGGTTATGATGCAGAAACCTCAGCAGAATTGATGTATGTCTGTGGCTCAGCCTCCCATGATCCtgctataaatattaattaaattccCACTGCCATAAAATTCACTATCATATgttattagagctgcacaatactgAGAAAATTCAGTTCAAACTTAATTCATAGACCAAATTAAAAACACAGAAGTGagccaaagtgctgtacagaaatgcaacaaaacaagcataatagtttataaatatgaggtaaaatattgctaaaatacCTATAAAGgcatatatataaactaaaataagaaAATCAAGTGTCAAAGGTCAACAGGGGAATGCTATATTTATTAGCTTTATGTATCTTTGTGTATAGTTATCATACCAAAATAAGCAGATAGTAGATATTTATCTCATCTAAATAAATCTGACTGAGGCTAAAATTAGTGGTGGGGCAAACATTGAGactttaaaacactatgaatgagtgtagcggcacggtggctcagtggttagcactgtggcctcacagcactcaggtctcttgagtcttggctgggtcagttggtgtttctgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctctggatgctccggtttcccccacagtccaaac
>TCONS_00048180
atatatatatatatatatatatatatatatttttttttttttgtattgtattgtatagtgTGATGTTTCTATTAGAGCTCGACATAAATGCATAGTTTGTCTTGGGTGACAAATGGCTTTGTTTCTAAAGGAGGGAATTCAGGTCCGAGttttacaataattaattaattctttattcAAAATGAGCTTCCAGATCCAGTTTGTAGATGAAGTCCATGAAGGCCGAGCACCGCTGACAGTGACTGTGGCGAACACAGAGGAGGAGTTCAGGAACACCACAGTTAAAGACCTGCAGAGAAAACTCATCCCAGAAGACGAGTATGAAAACACCATTCTGGTCTATGAATGTTCAACGCTGAAGAGAAATCGCACACTCGGCTCCTATAACATTCAACATGGCTCTGTTATTAGAGGCTTATGGCATGGAGGTATAAATCCTgctcatatttatattattgtagaAATCTCTTTATAG
>TCONS_00048181
ATGAAGATCTTCCAGATCCAGTTTGTAGATGAAGTCCATGAAGGCCGAGCACCGCTGACAGTGACTGTGGCGAACACAGAGGAGGAGTTCAGGAACACCACAGTTAAAGACCTGCAGAGAAAACTCATCCCAGAAGACGAGTATGAAAACACCATTCTGGTCTATGAATGTTCAACGCTGAAGAGAAATCGCACACTCGGCTCCTATAACATTCAACATGGCTCTGTTATTAGAGGCTTATGGCATGGAGGTATAAATCCTgctcatatttatattattgtagaAATCTCTTTATAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049068 False 1106 lncRNA 0.40 4 287659 291265
TCONS_00048180 False 475 lncRNA 0.36 2 288661 291347
TCONS_00048181 True 297 lncRNA 0.43 3 288661 294609

Neighbor

gene id symbol gene type direction distance location
XLOC_024359 NA coding downstream 10296 276131 ~ 277363 (-)
XLOC_024358 NA coding downstream 11556 272458 ~ 276103 (-)
XLOC_024357 CABZ01072254.1 coding downstream 18375 265360 ~ 269284 (-)
XLOC_024356 CU855936.1 coding downstream 31688 254462 ~ 255971 (-)
XLOC_024354 CU855936.2 coding downstream 43396 217686 ~ 244263 (-)
XLOC_024361 NA coding upstream 10399 305008 ~ 305657 (-)
XLOC_024362 prickle1a coding upstream 19999 314608 ~ 348784 (-)
XLOC_024363 NA coding upstream 65929 360538 ~ 363768 (-)
XLOC_024364 szl coding upstream 76555 371164 ~ 375882 (-)
XLOC_024365 CU633775.2 coding upstream 155734 450343 ~ 492549 (-)
XLOC_024349 NA non-coding downstream 121679 160873 ~ 165980 (-)
XLOC_024348 NA non-coding downstream 149511 137544 ~ 138148 (-)
XLOC_024366 NA non-coding upstream 160710 455319 ~ 456478 (-)
XLOC_024369 NA non-coding upstream 336324 630933 ~ 643106 (-)
XLOC_024375 CU861469.1 non-coding upstream 900673 1195282 ~ 1196112 (-)

Expression


Co-expression Network