G516744


Basic Information

Item Value
gene id G516744
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50091167 ~ 50091585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU586175
ctccctaaaacacttcagcgaacagGTCTTTCTAACCAACCTGGcgcgggtatcctggaaggatattgacctcatcccatcagtagaggatgccaggttgttctttaaaagtgctttcctcaccatcttaaataagaatGCCCCATtccaaaaatgtagaactaagaacagatatagcccttggttcactccagacttgactgcccttgaccagcacaaaaacatcctgtggcgtactacATTAGCGTCGattagcccccgtgatatgcaacttttcagggaagtcaggaaccaatatacacagtcagttaggaaagccaaggctagctttttcaaacagacatttgcatcctgtagctctaactccaaaatgttctgggacactgtaaagtccatggagaaaaagagcacctcctccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU586175 True 419 lncRNA 0.45 1 50091167 50091585

Neighbor

gene id symbol gene type direction distance location
rsph14 rsph14 coding upstream 4208 50072326 ~ 50086959 (+)
kazald3 LOC106587018 coding upstream 36686 50051204 ~ 50054481 (+)
grin1b LOC106587016 coding upstream 90151 49948638 ~ 50001016 (+)
spaca9 NA coding upstream 193803 49895848 ~ 49897364 (+)
barhl1a barhl1 coding upstream 337907 49748788 ~ 49753260 (+)
LOC110526093 dmtn coding downstream 15207 50106792 ~ 50208464 (+)
si:dkey-220o5.5 LOC106587021 coding downstream 106757 50198342 ~ 50299370 (+)
fam160b2 LOC106587022 coding downstream 208497 50300082 ~ 50312773 (+)
adam9 adam9 coding downstream 248450 50340035 ~ 50417982 (+)
ogdha LOC106587025 coding downstream 351931 50443516 ~ 50513889 (+)
G516734 NA non-coding upstream 2159 50088684 ~ 50089008 (+)
G516725 NA non-coding upstream 41144 50049711 ~ 50050023 (+)
G516700 NA non-coding upstream 65391 50025517 ~ 50025776 (+)
G516696 NA non-coding upstream 77355 50013611 ~ 50013812 (+)
G516692 NA non-coding upstream 80459 50010140 ~ 50010708 (+)
G516745 NA non-coding downstream 490 50092075 ~ 50092450 (+)
G516748 NA non-coding downstream 4623 50096208 ~ 50096449 (+)
G516751 NA non-coding downstream 10247 50101832 ~ 50102060 (+)
G516918 NA non-coding downstream 292421 50384006 ~ 50385057 (+)
LOC118964898 LOC106585477 other upstream 703955 49347319 ~ 49387212 (+)
G516011 NA other upstream 784027 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 844714 49233579 ~ 49260632 (+)
edf1 edf1 other upstream 903844 49183291 ~ 49187334 (+)
LOC118964907 NA other downstream 628816 50719208 ~ 50743120 (+)
LOC110526128 NA other downstream 820243 50911697 ~ 50922106 (+)
LOC110493840 LOC106605670 other downstream 2186908 52277694 ~ 52279409 (+)
G519603 NA other downstream 2560355 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3834357 53925942 ~ 53955130 (+)

Expression


Co-expression Network