XLOC_024363


Basic Information

Item Value
gene id XLOC_024363
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 360538 ~ 363768 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049070
GTATTGTGTGCAGCGTCCATCATTTAACCTGCCTGTGACATCATGAATGGAGTGGCCCCGCCCCCTCAGCCGTCCAACCAACCAGAGGCCGGCGCGGAGTTCTTAATGAAGTGCAGTGTTTTTCAGAGTGCAGTGAGGATGATGATGGtgaagatgatgatgacgacGGCTGGATTCGGACGCTCCGGGAAGAGTTTTCTGATGGAGAATCTGCTGCGGTCGACTCCAGTCCAGATCTACAGGACAAACACTGGTCCGGGGTCAGAAAACAGACAGCACACACAGAGGATTCACACTCCAGCAGTAATTATGTCCACCGTTAATCTGCCCTGTTGCTCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0045445 myoblast differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049070 True 339 lncRNA 0.53 2 360538 363768

Neighbor

gene id symbol gene type direction distance location
XLOC_024362 prickle1a coding downstream 11754 314608 ~ 348784 (-)
XLOC_024361 NA coding downstream 54881 305008 ~ 305657 (-)
XLOC_024360 NA coding downstream 65929 287659 ~ 294609 (-)
XLOC_024359 NA coding downstream 83175 276131 ~ 277363 (-)
XLOC_024358 NA coding downstream 84435 272458 ~ 276103 (-)
XLOC_024364 szl coding upstream 7396 371164 ~ 375882 (-)
XLOC_024365 CU633775.2 coding upstream 86575 450343 ~ 492549 (-)
XLOC_024366 NA coding upstream 91551 455319 ~ 456478 (-)
XLOC_024367 si:ch1073-385f13.3 coding upstream 116229 479997 ~ 483808 (-)
XLOC_024368 myo9ab coding upstream 121585 485353 ~ 554142 (-)
XLOC_024349 NA non-coding downstream 194558 160873 ~ 165980 (-)
XLOC_024369 NA non-coding upstream 267165 630933 ~ 643106 (-)
XLOC_024375 CU861469.1 non-coding upstream 831514 1195282 ~ 1196112 (-)
XLOC_024380 CR354429.1 non-coding upstream 1100611 1464379 ~ 1471185 (-)
XLOC_024381 NA non-coding upstream 1261112 1624880 ~ 1625918 (-)

Expression


Co-expression Network