G517115 (spinz)


Basic Information

Item Value
gene id G517115
gene name spinz
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50804663 ~ 50807357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU586587
TAATTATAAAAATGTCCTTACAGAATTATGTAACGTTAAAGTGTTTGTGCCAAATGACAAACTGTAACCATTTTCATTATTCAAAAATAATGCATTAGGTATATTAACTGAATGTAGAACACACAATGCCTTTAAGAACACATTTGACCTCTATATTGATGTATAAACAGGACTTCACTACTGTCCCTTAGCTATATCTAAATTCTCTTCCATTTCAACTCAAAATATGTTAGTCCTATTTTGACATACAACCACTGTGACTGAATATGTACACACAAGCTCCATccttacatgcacacacatttctCCCAATCAAATAAGGCAAGCTCTTTGTTGATACATACAAATAAGCCATGTTTTTgtggaaaaaacaaaaacaaaaaacagacaattgatttatttagaaatgtTACCCATTAAATGCTGTACAACACTGGCACCATTAGTTGGCACTCACTTAGCATTACCAGTCAACTGGTTTCTGTAATGCAtggtacaaaaacaacaaaataaatgtCACAGTTTACATAAGCTCATAACCTTGAAAAGAACAAACTGACATGCAACTCACATCAACTTACATTTAGCTATAAACATGAAAACACAAGTCTGCTTTTCAGAAGTGGAACTGACATTGCACACAATACAGCACAACAGTAATGTAAAATGTTAAATGCCCTGATGCCTCCCACAGCCATTGGCAGCATATGATGATTTCCACACCTTGGAAATCATGAAGGGGCCATCAAGGATCTAGCATTTTGACCAAAGTATATCCAGGTGCACATGGTTCAGAGACCTGTTGCAGACCTTCAAGATGTCTTATCAATAATACTACATTGAGGTTAGGCAGGAGCTGATCTTTGTACACAAGAGTGACTGTAGTAGCGGTAAGTAAACCTGCAGCAGCATCAGAAGAGCTGCATAGAACAACAGTGACATAGGCTTCAGTAACACAAGGTGAACAATTGAATCATGTATTAACAATACAACAATTCTCTCGTAAAAGAACCATGACATGGTTCTTTTTAGGTGGGAATTAGTTAAAATTCAAAATGCTGCAAGCAGGGTTCTAAGTTATGCaactaaatattttgctgtgcgacCTGGAGTTTTAATTTGGGAGCACTGTGCGAAATAATTATaatccaatatatatatatttttaataattGCTGTAATGATAAAGTGTCACTGTAACATTGTTTCCAGAGTGCAGATTAGTTAGCGTCATGCTTGCACCATTAATACAGTGAAAACTAAAGTTAAAAAGatctgacccatattaccagcacaatgattttttttcttcccgCATTTTACATTCATAAACCATGTCGCACATGGCGTCTGGCCCAATTGAACAGTGTAAATGTTCAGACATGCCGAAATCTGCAGAGGTCTCCCTTCTTTTAGAAAACAAAGTGAACTTGAAACAAAGTACACTAAAAGATTTCGCATTGGAAGCAGTGACACAGGAAACGACAAGTTCCACATTTGCAGCCtgtgaaggaattgtccatttTGAATGGAAATGTATGTTGTTTCAAAGAAAGCGTCAGAACATTTGCCAAGGTCTGTGGATCAATGATTTTCTCAATGCCTATGCCCTAAGACGTTTTTACTAAATCGTAGACGTAGATGTGAAAGTCGTCATCAAACTTGATGAAATAAACAGAGGGTTTGGCTTCAACCTGATGGATAACCATGCCAGTCCTTTTGCCGCCATCCTCTTTGGCATACTCCACTTGTTTGCCAACAAGGCTATCCACCACTTCTCCAGGCTCTCTCTCTGCTGGAGGCGAGTCATTGAATCAGGCATTATCCGGAGATCCCCCTCTTTGTAGTCATCCAAGAGTTGGTACATGTACAAAACAGGGTCCTTTTCGTAAGTGATGTAGAACCATGTGTTCATAATGGGAGCCTGTGCTAGCACCAtgcccctccactcctcctttgGTCCTTCATCTTGCTCAAACATGTGCTCCACTGCTTTACCTATCATGGTTTCTGCTAGCTGGGAATCGCTGACACGAGCTGG

Function

NR:

description
spindlin-Z

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU586587 True 2041 lncRNA 0.39 2 50804663 50807357

Neighbor

gene id symbol gene type direction distance location
tti2 tti2 coding upstream 13610 50784211 ~ 50791053 (+)
LOC110526112 LOC106587027 coding upstream 43594 50747281 ~ 50761069 (+)
LOC118964907 NA coding upstream 61543 50719208 ~ 50743120 (+)
LOC110526117 LOC106587027 coding upstream 85517 50711386 ~ 50719146 (+)
LOC118964908 LOC106587027 coding upstream 133866 50664006 ~ 50670797 (+)
LOC110526125 LOC106587031 coding downstream 10371 50817728 ~ 50846599 (+)
LOC110526127 LOC106586990 coding downstream 91739 50899096 ~ 50901094 (+)
LOC110526128 NA coding downstream 104340 50911697 ~ 50922106 (+)
LOC110526132 LOC106587036 coding downstream 184216 50991573 ~ 51017128 (+)
znf608 znf608 coding downstream 306629 51113986 ~ 51128144 (+)
G517108 NA non-coding upstream 22241 50781949 ~ 50782422 (+)
G517102 NA non-coding upstream 31057 50773346 ~ 50773606 (+)
G517101 NA non-coding upstream 31586 50772524 ~ 50773077 (+)
G517069 NA non-coding upstream 40546 50763716 ~ 50764117 (+)
G517068 NA non-coding upstream 41546 50762330 ~ 50763117 (+)
G517159 NA non-coding downstream 79918 50887275 ~ 50887712 (+)
G517166 NA non-coding downstream 96341 50903698 ~ 50903955 (+)
G517181 NA non-coding downstream 146074 50953431 ~ 50953865 (+)
barhl1a barhl1 other upstream 1052914 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1417451 49347319 ~ 49387212 (+)
G516011 NA other upstream 1497523 49305125 ~ 49307140 (+)
LOC110526066 LOC106584148 other upstream 1558210 49233579 ~ 49260632 (+)
LOC110493840 LOC106605670 other downstream 1471136 52277694 ~ 52279409 (+)
G519603 NA other downstream 1844583 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 3118585 53925942 ~ 53955130 (+)
G521914 NA other downstream 3462568 54269925 ~ 54270259 (+)

Expression


Co-expression Network