G517181


Basic Information

Item Value
gene id G517181
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 50953431 ~ 50953865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU586659
atacagtggggcaaaaaaatatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaatccagaaaatcacattgcaggatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacttacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccacttgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaagtgTATACCTgcgccaggctgggaagac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU586659 True 435 lncRNA 0.39 1 50953431 50953865

Neighbor

gene id symbol gene type direction distance location
LOC110526128 NA coding upstream 31325 50911697 ~ 50922106 (+)
LOC110526127 LOC106586990 coding upstream 52337 50899096 ~ 50901094 (+)
LOC110526125 LOC106587031 coding upstream 106832 50817728 ~ 50846599 (+)
tti2 tti2 coding upstream 162378 50784211 ~ 50791053 (+)
LOC110526112 LOC106587027 coding upstream 192362 50747281 ~ 50761069 (+)
LOC110526132 LOC106587036 coding downstream 37708 50991573 ~ 51017128 (+)
znf608 znf608 coding downstream 160121 51113986 ~ 51128144 (+)
LOC110526137 cep120 coding downstream 205569 51159434 ~ 51225264 (+)
LOC118964909 NA coding downstream 758925 51712790 ~ 51718231 (+)
homer1b homer1 coding downstream 929418 51883283 ~ 52006875 (+)
G517166 NA non-coding upstream 49476 50903698 ~ 50903955 (+)
G517159 NA non-coding upstream 65719 50887275 ~ 50887712 (+)
G517115 spinz non-coding upstream 146074 50804663 ~ 50807357 (+)
G517186 NA non-coding downstream 5075 50958940 ~ 50959139 (+)
G517073 LOC106587035 non-coding downstream 26361 50980226 ~ 50984195 (+)
G517961 NA non-coding downstream 127848 51081713 ~ 51082079 (+)
G517978 NA non-coding downstream 140078 51093943 ~ 51094182 (+)
G517998 NA non-coding downstream 155917 51109782 ~ 51110093 (+)
LOC118964907 NA other upstream 218195 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 1201682 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1566219 49347319 ~ 49387212 (+)
G516011 NA other upstream 1646291 49305125 ~ 49307140 (+)
LOC110493840 LOC106605670 other downstream 1324628 52277694 ~ 52279409 (+)
G519603 NA other downstream 1698075 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2972077 53925942 ~ 53955130 (+)
G521914 NA other downstream 3316060 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3925834 54793125 ~ 54954478 (+)

Expression


Co-expression Network