G517978


Basic Information

Item Value
gene id G517978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51093943 ~ 51094182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU587552
CCCTTTTCCCGTGCACTctttagatagtcgaccattagggtcagggctggtcagggaggccacgattcctTTGGAGATGAttacgcaggggaatcataaggAGCgaattagtctgttccttatcgattcacctgcgtttccggtggtgctggggattccctggctggctattcacaatccgACTATTTCGTGGAAACAGGGAACTCTCCAGGGGTGGTCTGAtgagtgttcaggcaggtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU587552 True 240 lncRNA 0.53 1 51093943 51094182

Neighbor

gene id symbol gene type direction distance location
LOC110526132 LOC106587036 coding upstream 76815 50991573 ~ 51017128 (+)
LOC110526128 NA coding upstream 171837 50911697 ~ 50922106 (+)
LOC110526127 LOC106586990 coding upstream 192849 50899096 ~ 50901094 (+)
LOC110526125 LOC106587031 coding upstream 247344 50817728 ~ 50846599 (+)
tti2 tti2 coding upstream 302890 50784211 ~ 50791053 (+)
znf608 znf608 coding downstream 19804 51113986 ~ 51128144 (+)
LOC110526137 cep120 coding downstream 65252 51159434 ~ 51225264 (+)
LOC118964909 NA coding downstream 618608 51712790 ~ 51718231 (+)
homer1b homer1 coding downstream 789101 51883283 ~ 52006875 (+)
LOC110493840 LOC106605670 coding downstream 1183512 52277694 ~ 52279409 (+)
G517961 NA non-coding upstream 11864 51081713 ~ 51082079 (+)
G517073 LOC106587035 non-coding upstream 109748 50980226 ~ 50984195 (+)
G517186 NA non-coding upstream 134804 50958940 ~ 50959139 (+)
G517181 NA non-coding upstream 140078 50953431 ~ 50953865 (+)
G517998 NA non-coding downstream 15600 51109782 ~ 51110093 (+)
G518012 NA non-coding downstream 39477 51133659 ~ 51133895 (+)
G518036 NA non-coding downstream 53975 51148157 ~ 51148377 (+)
G518132 NA non-coding downstream 135814 51229996 ~ 51230526 (+)
G518133 NA non-coding downstream 137343 51231525 ~ 51231822 (+)
LOC118964907 NA other upstream 358707 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 1342194 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1706731 49347319 ~ 49387212 (+)
G516011 NA other upstream 1786803 49305125 ~ 49307140 (+)
G519603 NA other downstream 1557758 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2831760 53925942 ~ 53955130 (+)
G521914 NA other downstream 3175743 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3785517 54793125 ~ 54954478 (+)

Expression


Co-expression Network