G517998


Basic Information

Item Value
gene id G517998
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51109782 ~ 51110093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU587572
CTACTaggcaactatacatagtcaagatcccacaaagcacaaaatgaaatacctaaaaaaatgaaatacctaaatatgatccccaatcagagagaacgataaacagctgcctctgattgggaaccatactaggccaacatagaaatacaattgtgtcgccagtacgcgctcatagcccggtgcgctataggccagccccccgcaagtgccatgcgagagtgggcatccagccagggcgtattGTGCCGGCCCAACTTGTTTGGTCTCTGGTACAacgtttcggcccagggtatcctgcaccggctctgcgtg

Function

NR:

description
PREDICTED: extensin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU587572 True 312 lncRNA 0.50 1 51109782 51110093

Neighbor

gene id symbol gene type direction distance location
LOC110526132 LOC106587036 coding upstream 92654 50991573 ~ 51017128 (+)
LOC110526128 NA coding upstream 187676 50911697 ~ 50922106 (+)
LOC110526127 LOC106586990 coding upstream 208688 50899096 ~ 50901094 (+)
LOC110526125 LOC106587031 coding upstream 263183 50817728 ~ 50846599 (+)
tti2 tti2 coding upstream 318729 50784211 ~ 50791053 (+)
znf608 znf608 coding downstream 3893 51113986 ~ 51128144 (+)
LOC110526137 cep120 coding downstream 49341 51159434 ~ 51225264 (+)
LOC118964909 NA coding downstream 602697 51712790 ~ 51718231 (+)
homer1b homer1 coding downstream 773190 51883283 ~ 52006875 (+)
LOC110493840 LOC106605670 coding downstream 1167601 52277694 ~ 52279409 (+)
G517978 NA non-coding upstream 15600 51093943 ~ 51094182 (+)
G517961 NA non-coding upstream 27703 51081713 ~ 51082079 (+)
G517073 LOC106587035 non-coding upstream 125587 50980226 ~ 50984195 (+)
G517186 NA non-coding upstream 150643 50958940 ~ 50959139 (+)
G517181 NA non-coding upstream 155917 50953431 ~ 50953865 (+)
G518012 NA non-coding downstream 23566 51133659 ~ 51133895 (+)
G518036 NA non-coding downstream 38064 51148157 ~ 51148377 (+)
G518132 NA non-coding downstream 119903 51229996 ~ 51230526 (+)
G518133 NA non-coding downstream 121432 51231525 ~ 51231822 (+)
G518182 NA non-coding downstream 184095 51294188 ~ 51294400 (+)
LOC118964907 NA other upstream 374546 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 1358033 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1722570 49347319 ~ 49387212 (+)
G516011 NA other upstream 1802642 49305125 ~ 49307140 (+)
G519603 NA other downstream 1541847 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2815849 53925942 ~ 53955130 (+)
G521914 NA other downstream 3159832 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3769606 54793125 ~ 54954478 (+)

Expression


Co-expression Network