G518435


Basic Information

Item Value
gene id G518435
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51658333 ~ 51663288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU588039
cttttctccccctctttcccccagctgtgccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgattagtcctctatatctctctctgtttctgctcctgtctttgtcggattcttgtttgtgttgttcatgcctgaaccagactatcgtcatgtttgctgcaaccttgtcctgtcctgtcggaacctgccggtccatctgagcctacgttttgttttgttattaaagaagctctgtttacgttcattcgcttttgggtcctcattcacgcaccgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU588039 True 301 lncRNA 0.48 2 51658333 51663288

Neighbor

gene id symbol gene type direction distance location
LOC110526137 cep120 coding upstream 433069 51159434 ~ 51225264 (+)
znf608 znf608 coding upstream 530189 51113986 ~ 51128144 (+)
LOC110526132 LOC106587036 coding upstream 641205 50991573 ~ 51017128 (+)
LOC110526128 NA coding upstream 736227 50911697 ~ 50922106 (+)
LOC110526127 LOC106586990 coding upstream 757239 50899096 ~ 50901094 (+)
LOC118964909 NA coding downstream 49502 51712790 ~ 51718231 (+)
homer1b homer1 coding downstream 219995 51883283 ~ 52006875 (+)
LOC110493840 LOC106605670 coding downstream 614406 52277694 ~ 52279409 (+)
otpb LOC106587051 coding downstream 721854 52385142 ~ 52390468 (+)
mapk8ip1b LOC106587053 coding downstream 861068 52524356 ~ 52645645 (+)
G518354 NA non-coding upstream 32726 51607349 ~ 51625607 (+)
G518365 NA non-coding upstream 91774 51563330 ~ 51566559 (+)
G518181 snx2 non-coding upstream 312806 51337013 ~ 51345527 (+)
G518186 NA non-coding upstream 356795 51301268 ~ 51301538 (+)
G518185 NA non-coding upstream 357643 51300395 ~ 51300690 (+)
G518452 NA non-coding downstream 24852 51688140 ~ 51688536 (+)
G518773 NA non-coding downstream 72472 51735760 ~ 51738373 (+)
G518797 NA non-coding downstream 181913 51845201 ~ 51845492 (+)
G518799 NA non-coding downstream 182358 51845646 ~ 51845924 (+)
G518795 NA non-coding downstream 183025 51846313 ~ 51846872 (+)
LOC118964907 NA other upstream 923097 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 1906584 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 2271121 49347319 ~ 49387212 (+)
G516011 NA other upstream 2351193 49305125 ~ 49307140 (+)
G519603 NA other downstream 988652 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2262654 53925942 ~ 53955130 (+)
G521914 NA other downstream 2606637 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3216411 54793125 ~ 54954478 (+)

Expression


Co-expression Network