G518848


Basic Information

Item Value
gene id G518848
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51873041 ~ 51873363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU588487
gtcattgtctctgattgggaaccatatttaggtagcctggggttcactgtgtgtttgtgggtgattgttcctgtctatgtgtttttcaccagataggctgttttaggttttcgttacgttcatcacgttctttattttgtagtgtttgcattgattcgtgttttacgtttgttcattaaaacatggatcgcaatctacacgctgcattttggtccgactctccttctcacgaagaaaaccgttacagaatcacccaccaccaacggaccaagcagcgtgtcaacaggcagcagcagcagcgtaaagaggaatggacatgggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU588487 True 323 lncRNA 0.45 1 51873041 51873363

Neighbor

gene id symbol gene type direction distance location
LOC118964909 NA coding upstream 154810 51712790 ~ 51718231 (+)
LOC110526137 cep120 coding upstream 647777 51159434 ~ 51225264 (+)
znf608 znf608 coding upstream 744897 51113986 ~ 51128144 (+)
LOC110526132 LOC106587036 coding upstream 855913 50991573 ~ 51017128 (+)
LOC110526128 NA coding upstream 950935 50911697 ~ 50922106 (+)
homer1b homer1 coding downstream 9920 51883283 ~ 52006875 (+)
LOC110493840 LOC106605670 coding downstream 404331 52277694 ~ 52279409 (+)
otpb LOC106587051 coding downstream 511779 52385142 ~ 52390468 (+)
mapk8ip1b LOC106587053 coding downstream 650993 52524356 ~ 52645645 (+)
LOC110502468 LOC106605670 coding downstream 681642 52555005 ~ 52558912 (+)
G518795 NA non-coding upstream 26169 51846313 ~ 51846872 (+)
G518799 NA non-coding upstream 27117 51845646 ~ 51845924 (+)
G518797 NA non-coding upstream 27549 51845201 ~ 51845492 (+)
G518773 NA non-coding upstream 134668 51735760 ~ 51738373 (+)
G518452 NA non-coding upstream 184505 51688140 ~ 51688536 (+)
G519109 NA non-coding downstream 149995 52023358 ~ 52023625 (+)
G519110 NA non-coding downstream 150385 52023748 ~ 52024087 (+)
G519118 NA non-coding downstream 157798 52031161 ~ 52031392 (+)
G519306 NA non-coding downstream 277662 52151025 ~ 52151235 (+)
G519374 NA non-coding downstream 332416 52205779 ~ 52206004 (+)
LOC118964907 NA other upstream 1137805 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 2121292 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 2485829 49347319 ~ 49387212 (+)
G516011 NA other upstream 2565901 49305125 ~ 49307140 (+)
G519603 NA other downstream 778577 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2052579 53925942 ~ 53955130 (+)
G521914 NA other downstream 2396562 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3006336 54793125 ~ 54954478 (+)

Expression


Co-expression Network