G519602


Basic Information

Item Value
gene id G519602
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52648357 ~ 52649692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU589274
cctctctcatctttttaagtgggggaacttgcacaattggtggctgactaaatacttttttgccccactgtacctggaTAATCCGGTGCGTCTTGCATGTCCGTGTCCCCCTCCGTCACTACTCCACTCAGGAGGGATATCCCTATAATACTGGCAAGTCGCTCATCAAGGAGCAAGGGGATTGGCCTCCACTTTTATGTCTGAccacttatttttttatttctgaGAAAGCCCGACCTTCTGAGACAGCAGCATTCACAGCATCTGCCATATGCTGCCACTCTAACGCCTTTTTGGCATTTGTAATTCCCACACTGTGTCCACCAAACAATATATTTTTTCTTGCTTCAACCTCCCCTACAAGAACTTCCATTTCACACTGGATGAAATTAATTTTTTTAGCCTTTCTGTCAGGATTTGTTGTCAATGTTGTCATGCAGTCAGTATGGATGAATATTAATTAGGAACGTTTCACTGACTATTTATAGGCAACCATGGGCGTTAAAAGGGTGGGACAAGATGCTCGCTCACGTGTGCCAAATTTCGAGTTGATCGTGATATATACAGGGAAACAGGTGTGGGTCGTGCATGCGCATTGTGGTATAAATCTGAATATTTTTGCGCATAAGCACTTTCTGTGTTTCTCCGTACGCCACCTTTTGATGTGAATCATCCGCACagttttataaatgaggcccctgaaCTGGAGAATTCTAAGACTAATCTTTGTGGATTTAGAGCTTGAATCCCAGATAGAACACTGGGCTTTGTGGACTTGGTGAACTGAAAAACGACCAATAGTCGCTAAGGTAACAGCAAATGGAGgtcagggaaaataaatcaataaatgaaTAAAGATCTTGTTAAATTACTAGTATTTGAGTATTCTAATCCCTAATTCTATGGAATCTCGAATGTTGGTGTGATACATTGTGTGAGGAAAACAGTGATTATCCATGAGCTAATGGTGCAGTGTGTTTGGAGAGGGTGATAAGGCCTCACTGGAGAGTCCTGTGGTCTAAGGTAACTAACGATCTAAAATCAGATTACCCCACCCTATCCTTTGCAATTAAGGGGATGACAAATTATCTGCCAAATTATCAGTGGCTCACACTGTTACTTATTTTCCATGTGTTTGTTCCCCCTACACCAAAAACAAGTAAGCATTAGGGTCACACTGTTAACCAGGAATAGTGTCTTTAACATGCTGCAAAGCCTTTTGTGTTCTCTCTGGTACACTGTCAGAACCCTCAAATATATTCACATTAAGGAATCAAGAGCAAACTTTTAAAACAGAGGTTCCTACCAATAAAAGCGCTCACACTGTTTTCTGTTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC104953338, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU589274 True 1336 lncRNA 0.41 1 52648357 52649692

Neighbor

gene id symbol gene type direction distance location
mapk8ip1b LOC106587053 coding upstream 2712 52524356 ~ 52645645 (+)
LOC110502468 LOC106605670 coding upstream 89445 52555005 ~ 52558912 (+)
otpb LOC106587051 coding upstream 257889 52385142 ~ 52390468 (+)
LOC110493840 LOC106605670 coding upstream 368948 52277694 ~ 52279409 (+)
homer1b homer1 coding upstream 641482 51883283 ~ 52006875 (+)
LOC118965081 NA coding downstream 416335 53066027 ~ 53067743 (+)
LOC110526152 LOC106587056 coding downstream 461448 53111140 ~ 53202399 (+)
LOC118965122 NA coding downstream 509219 53158911 ~ 53159015 (+)
LOC118965121 NA coding downstream 513403 53163095 ~ 53163203 (+)
LOC110526153 LOC106587057 coding downstream 705086 53354778 ~ 53759596 (+)
G519564 NA non-coding upstream 182167 52464049 ~ 52466190 (+)
G519388 NA non-coding upstream 431049 52216987 ~ 52217308 (+)
G519379 NA non-coding upstream 439367 52207796 ~ 52208990 (+)
G519376 NA non-coding upstream 442037 52206117 ~ 52206320 (+)
G519374 NA non-coding upstream 442353 52205779 ~ 52206004 (+)
G519675 NA non-coding downstream 6512 52656204 ~ 52656459 (+)
G519685 LOC106587054 non-coding downstream 20733 52670425 ~ 52674545 (+)
G520259 NA non-coding downstream 255744 52905436 ~ 52905657 (+)
G520260 NA non-coding downstream 256030 52905722 ~ 52905931 (+)
G520505 NA non-coding downstream 438567 53088259 ~ 53088587 (+)
LOC110526128 NA other upstream 1726260 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 1913121 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 2896608 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 3261145 49347319 ~ 49387212 (+)
G519603 NA other downstream 2248 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 1276250 53925942 ~ 53955130 (+)
G521914 NA other downstream 1620233 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 2230007 54793125 ~ 54954478 (+)
G523529 NA other downstream 2834557 55484249 ~ 55484607 (+)

Expression


Co-expression Network