G519685 (LOC106587054)


Basic Information

Item Value
gene id G519685
gene name LOC106587054
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 52670425 ~ 52674545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU589358
CGCAGTTTATATTAAAAGATAGCAAAGGGGTAATTCACTACATCACACAACACAGCTTGTTAGTACTGCAGGAAATTCATTTAGTATTTTTCATATTTACACATTAAGTGACAACCAAACAAAGAAATCATAAATATCTCTTTTAGTTAACTTTACAACAGTTATATGTGACCATTATTAAATAACTGGCAGCAACCCTATCATTTACAATGTTTGGAAACACAGTGGTTAAATAATCCAGCAAAACAAAAATGTTCTTCTCCAGTGAGTAATATTAATACAAGTAAAAACAATAATGAAATCCCTTTGTACAAAATACTCTCTATACAACAAAATCAACACAATATATTTGACAATTTGTCTGCTTAAAATGCATGGTAAAATCTGTACAGCTTAGAAACCTTTGCTGAGTGGGTGGGATTCTGTGTGTTAGCGTAGTTAATGATTGAAGCATTGGTCAGATTGATGCGTCTGTGATCCAACCATCAGAGACCGCAGGTAAAATAGCTGCCAAGACCTTCTCTCATTGGCATCAGTGCTGTGGAATTCCTGTCTAGCAGCAAATCAGCATGTTGCTGAACTTGAAGTTACTTCAAGATACATGGTTTTGAGAACTCAAACTGATATCTGTCCAGAGCAATGCTCTATTTCCCACCCTATGCATTTCCATGACAGATTGTACAGTACAAAACCATGTTAAATGTAAGGGCTAAATTCAATCTGTAATGCTGAAGATCCGCACTACAGcgcgattgaaatgtaaaggcaatgttcccaagttcgcagagactgcattcacggtaaacgctgcatatgtaatatatattgtttttatttgaaTAATATGGATGGTTCCGTAAATTACCAGTGGTATATTCTTTGTCTAAAGTAACACCTCTGTGATATATGGTTAATGGTAATCTCATATACTGTAcggtgcattcgaaaagtattcagaccccttgaatttttccacatttttatgttacagccttattctaaaatagattcaatatttttttccccctcaatctacacacaatacccaacaaCGACAACActaaaacagtataaaaaaaactgaaatatcacatttacataagtattcagaccctttaatcagtacattgttgaagcgcTTTTGgcagtcttcttgtgtatgacgctacaagcttggcacacctgcatttgggtagtttctcctattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgttgctgcacagctattttcaggtctctccagagatgttcgattaggttcaagtccgggctctggcttggccactcaaggacattgagacttgttccaaagccactcctgcgttgtcttggctttgtgcttagggtcgttgtcctgttgtaaggtgaacctttccctcgatccagtctagtatcccagtccctgccactgaaaaacatccccacagcatgatgctgccaccaccttgcttcaccgtaaggatggtgccaggtttcctccagacatgacgtttggcattcaggccaaagagttcaaccttggtttcatcagaccggagaatcttgtttctcatggtctgagagtctttacgtgccttttggcaaaatccaagagggctgtcatgtgccttttactgatgagtggcttccctctggccacttccataaaggcctgattggttgagtgctacagagatggttgtccttctggaaggttctcccatctccacagagaaacaatggagctctgtcagagtgaccattgtgttcttgttcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggcggccagctctgggaagagtcttggtggttccaaacttcttccatttaagaacgatggaggccactgtgttctttagaACCTtcttcagatctgtgcctcgacacaatcctgtgtctGAGCAATATGGACAATTCCTCCgacctcatggcatggtttttgctctgacatggactgtcaactgtgggacattataaagacaggtgtgtgcctttccaaatcatgtccaatcatttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaattttttgtcttattgcaaagggtctgaatacttatgtaaataaggcatctgttttacattttgtataaaatgtgcaaacatttctaaaaaacagttttctctttgtcattatggggtattgtgtggaggttgatgagggaaaaaacatatttaatcaatttcagaataaggccgTAAAGTAACAATGTGGAGAAGTCaataagtctgaatactttcccgaatgcactgtatgtgcattGTATATTTCACAGAGGGCAACCTTGTCAAATTACATAATACACTGAAGCTTATTCTATAGCTTAGACTAGAACAGTGGGCACTAAGTGTACAGTGCTTTACAGGTTCAGAGATGACAGATATTTGCCTTAATCAGAACAGCTAAAAGAATGTAAAGCACATTTTACGAACTCCAAGAAATATCAAACTGAggaaagaaaaaaatgaaaaaaatgtttGGCACTTATACTTCATCGAGAATGCTATTTCACGAGGACCAGAAATGGTTTACTTGCAGTTTACTTTAGATTTTTAAAATGAATGGATTTCAACAGTTTCCAGTACCAGTCTAGAGTACCCATTTCCAGTACCAATCTAGAGTACCAGTTTCCAGGACCTGTCTAGAGTACCAGTTAAGAGAGATCAGATAGATAAGTCCATGGTTGGTTTTAGAAGAGGAGGTATACAATGTGAAACATGTTTGAAACAGATCGTCCCATTGCTGAGCTCTCCCATAGGTaactgtctttctctcctttacGTGGCACATAGCCTACAAAATGTTATTCTAGTATAAATGTAGACGTAGCGAAGCTCCACCCTTTGGCACATAAATATAGAGGTTTGAATGACTGGGTCATACTGCAATACAGATCTACACAACACTCTCACCATTCTTTAAAATCAGCAAAAACCAACTCAAAGAACAAAAAGTTCATAAATAGAGTTCATAAGGACATGGTATATGATGAGTGGCATTATAGAGAGAGCGAGCAGTTTGTTACATAGTCTCCTGCGGGAGTATATCGTTTTTAGCTTTGTCAAAAACTTCACAAAAAATGCAATGTAATATACTAAGCGGCCCTCACCTTGAGGGGTTGCATTCTTTAAAAAGGCTCCAGATTTCTCTGTTTGTCATTTCTTTTCTCAAAgtgtatttttttgctttctttttCCAGCATGCTTGTAAATTGTAATTCAGTCTGTTGCCTGAAGTGGGTAGCGGTGAGTCAGTTTGTGGTTGTGAGAGGGTGGTGGTAAGAgtgcggatgtgtgtgtgtaggatgaaGTCCAGCGGGCCGAGGAGATGCCAGATTTGTATGCATGCATaaatgtgtgtgtagcatgaagtATGTATGTGACTGTAGTGTTTGTATGTACCACTTATCTGTGTGAGTGTCAGCTTGTGTATGACTCACTGTGGCCTGAAGCATAAGTACGTATCgtttactgtatgtatgtatactgtatacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaaagggTGTGTAGTTGAAGGGATCAGGAGGACTAAGGGTAAAGAGTAGGAGTAGGGAGGCAGTGAAGCAAGAGGCCTCCCTTACACCTCGCTCTCGGTAGAGGGTTTGCGTGCGGGGGTCCAGCCGGTGTCAGGCAGGCTGTGTTGGGGGTGGCGTTGGGGTGTGACGGTGACGGGGGTCAGCGTGTTTATGGACGAACACTCCGACGTCTCCTCTTGGAGCAACTGCTCTGTCTCGCCGTCGTCCAGCGAGGCGCTGCTGGCCTGCAGGGACACAGTGTCCGTGCGCATGCATGTGTGCAGACCACCACGTGACGGCTTCAGCTGCTTCAGGTCCTCCCAGTACAGCTCCTCGCTGGAGAGGAGACACACTCCTTCCACGATGCGGATCTTCTCCTTGGTGTAGCCACTGTCCCCG
>TU589359
CGCAGTTTATATTAAAAGATAGCAAAGGGGTAATTCACTACATCACACAACACAGCTTGTTAGTACTGCAGGAAATTCATTTAGTATTTTTCATATTTACACATTAAGTGACAACCAAACAAAGAAATCATAAATATCTCTTTTAGTTAACTTTACAACAGTTATATGTGACCATTATTAAATAACTGGCAGCAACCCTATCATTTACAATGTTTGGAAACACAGTGGTTAAATAATCCAGCAAAACAAAAATGTTCTTCTCCAGTGAGTAATATTAATACAAGTAAAAACAATAATGAAATCCCTTTGTACAAAATACTCTCTATACAACAAAATCAACACAATATATTTGACAATTTGTCTGCTTAAAATGCATGGTAAAATCTGTACAGCTTAGAAACCTTTGCTGAGTGGGTGGGATTCTGTGTGTTAGCGTAGTTAATGATTGAAGCATTGGTCAGATTGATGCGTCTGTGATCCAACCATCAGAGACCGCAGGTAAAATAGCTGCCAAGACCTTCTCTCATTGGCATCAGTGCTGTGGAATTCCTGTCTAGCAGCAAATCAGCATGTTGCTGAACTTGAAGTTACTTCAAGATACATGGTTTTGAGAACTCAAACTGATATCTGTCCAGAGCAATGCTCTATTTCCCACCCTATGCATTTCCATGACAGATTGTACAGTACAAAACCATGTTAAATGTAAGGGCTAAATTCAATCTGTAATGCTGAAGATCCGCACTACAGcgcgattgaaatgtaaaggcaatgttcccaagttcgcagagactgcattcacggtaaacgctgcatatgtaatatatattgtttttatttgaaTAATATGGATGGTTCCGTAAATTACCAGTGGTATATTCTTTGTCTAAAGTAACACCTCTGTGATATATGGTTAATGGTAATCTCATATACTGTAcggtgcattcgaaaagtattcagaccccttgaatttttccacatttttatgttacagccttattctaaaatagattcaatatttttttccccctcaatctacacacaatacccaacaaCGACAACActaaaacagtataaaaaaaactgaaatatcacatttacataagtattcagaccctttaatcagtacattgttgaagcgcTTTTGgcagtcttcttgtgtatgacgctacaagcttggcacacctgcatttgggtagtttctcctattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgttgctgcacagctattttcaggtctctccagagatgttcgattaggttcaagtccgggctctggcttggccactcaaggacattgagacttgttccaaagccactcctgcgttgtcttggctttgtgcttagggtcgttgtcctgttgtaaggtgaacctttccctcgatccagtctagtatcccagtccctgccactgaaaaacatccccacagcatgatgctgccaccaccttgcttcaccgtaaggatggtgccaggtttcctccagaccggagaatcttgtttctcatggtctgagagtctttacgtgccttttggcaaaatccaagagggctgtcatgtgccttttactgatgagtggcttccctctggccacttccataaaggcctgattggttgagtgctacagagatggttgtccttctggaaggttctcccatctccacagagaaacaatggagctctgtcagagtgaccattgtgttcttgttcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggcggccagctctgggaagagtcttggtggttccaaacttcttccatttaagaacgatggaggccactgtgttctttagaACCTtcttcagatctgtgcctcgacacaatcctgtgtctGAGCAATATGGACAATTCCTCCgacctcatggcatggtttttgctctgacatggactgtcaactgtgggacattataaagacaggtgtgtgcctttccaaatcatgtccaatcatttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaattttttgtcttattgcaaagggtctgaatacttatgtaaataaggcatctgttttacattttgtataaaatgtgcaaacatttctaaaaaacagttttctctttgtcattatggggtattgtgtggaggttgatgagggaaaaaacatatttaatcaatttcagaataaggccgTAAAGTAACAATGTGGAGAAGTCaataagtctgaatactttcccgaatgcactgtatgtgcattGTATATTTCACAGAGGGCAACCTTGTCAAATTACATAATACACTGAAGCTTATTCTATAGCTTAGACTAGAACAGTGGGCACTAAGTGTACAGTGCTTTACAGGTTCAGAGATGACAGATATTTGCCTTAATCAGAACAGCTAAAAGAATGTAAAGCACATTTTACGAACTCCAAGAAATATCAAACTGAggaaagaaaaaaatgaaaaaaatgtttGGCACTTATACTTCATCGAGAATGCTATTTCACGAGGACCAGAAATGGTTTACTTGCAGTTTACTTTAGATTTTTAAAATGAATGGATTTCAACAGTTTCCAGTACCAGTCTAGAGTACCCATTTCCAGTACCAATCTAGAGTACCAGTTTCCAGGACCTGTCTAGAGTACCAGTTAAGAGAGATCAGATAGATAAGTCCATGGTTGGTTTTAGAAGAGGAGGTATACAATGTGAAACATGTTTGAAACAGATCGTCCCATTGCTGAGCTCTCCCATAGGTaactgtctttctctcctttacGTGGCACATAGCCTACAAAATGTTATTCTAGTATAAATGTAGACGTAGCGAAGCTCCACCCTTTGGCACATAAATATAGAGGTTTGAATGACTGGGTCATACTGCAATACAGATCTACACAACACTCTCACCATTCTTTAAAATCAGCAAAAACCAACTCAAAGAACAAAAAGTTCATAAATAGAGTTCATAAGGACATGGTATATGATGAGTGGCATTATAGAGAGAGCGAGCAGTTTGTTACATAGTCTCCTGCGGGAGTATATCGTTTTTAGCTTTGTCAAAAACTTCACAAAAAATGCAATGTAATATACTAAGCGGCCCTCACCTTGAGGGGTTGCATTCTTTAAAAAGGCTCCAGATTTCTCTGTTTGTCATTTCTTTTCTCAAAgtgtatttttttgctttctttttCCAGCATGCTTGTAAATTGTAATTCAGTCTGTTGCCTGAAGTGGGTAGCGGTGAGTCAGTTTGTGGTTGTGAGAGGGTGGTGGTAAGAgtgcggatgtgtgtgtgtaggatgaaGTCCAGCGGGCCGAGGAGATGCCAGATTTGTATGCATGCATaaatgtgtgtgtagcatgaagtATGTATGTGACTGTAGTGTTTGTATGTACCACTTATCTGTGTGAGTGTCAGCTTGTGTATGACTCACTGTGGCCTGAAGCATAAGTACGTATCgtttactgtatgtatgtatactgtatacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaaagggTGTGTAGTTGAAGGGATCAGGAGGACTAAGGGTAAAGAGTAGGAGTAGGGAGGCAGTGAAGCAAGAGGCCTCCCTTACACCTCGCTCTCGGTAGAGGGTTTGCGTGCGGGGGTCCAGCCGGTGTCAGGCAGGCTGTGTTGGGGGTGGCGTTGGGGTGTGACGGTGACGGGGGTCAGCGTGTTTATGGACGAACACTCCGACGTCTCCTCTTGGAGCAACTGCTCTGTCTCGCCGTCGTCCAGCGAGGCGCTGCTGGCCTGCAGGGACACAGTGTCCGTGCGCATGCATGTGTGCAGACCACCACGTGACGGCTTCAGCTGCTTCAGGTCCTCCCAGTACAGCTCCTCGCTGGAGAGGAGACACACTCCTTCCACGATGCGGATCTTCTCCTTGGTGTAGCCACTGTCCCCG

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU589358 False 4083 lncRNA 0.42 2 52670425 52674545
TU589359 True 4072 lncRNA 0.42 2 52670425 52674545

Neighbor

gene id symbol gene type direction distance location
mapk8ip1b LOC106587053 coding upstream 24780 52524356 ~ 52645645 (+)
LOC110502468 LOC106605670 coding upstream 111513 52555005 ~ 52558912 (+)
otpb LOC106587051 coding upstream 279957 52385142 ~ 52390468 (+)
LOC110493840 LOC106605670 coding upstream 391016 52277694 ~ 52279409 (+)
homer1b homer1 coding upstream 663550 51883283 ~ 52006875 (+)
LOC118965081 NA coding downstream 391482 53066027 ~ 53067743 (+)
LOC110526152 LOC106587056 coding downstream 436595 53111140 ~ 53202399 (+)
LOC118965122 NA coding downstream 484366 53158911 ~ 53159015 (+)
LOC118965121 NA coding downstream 488550 53163095 ~ 53163203 (+)
LOC110526153 LOC106587057 coding downstream 680233 53354778 ~ 53759596 (+)
G519675 NA non-coding upstream 13966 52656204 ~ 52656459 (+)
G519602 NA non-coding upstream 20733 52648357 ~ 52649692 (+)
G519564 NA non-coding upstream 204235 52464049 ~ 52466190 (+)
G519388 NA non-coding upstream 453117 52216987 ~ 52217308 (+)
G519379 NA non-coding upstream 461435 52207796 ~ 52208990 (+)
G520259 NA non-coding downstream 230891 52905436 ~ 52905657 (+)
G520260 NA non-coding downstream 231177 52905722 ~ 52905931 (+)
G520505 NA non-coding downstream 413714 53088259 ~ 53088587 (+)
G520507 NA non-coding downstream 414821 53089366 ~ 53089634 (+)
G520508 NA non-coding downstream 416237 53090782 ~ 53091037 (+)
G519603 NA other upstream 15128 52651940 ~ 52655297 (+)
LOC110526128 NA other upstream 1748328 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 1935189 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 2918676 49748788 ~ 49753260 (+)
G521552 prmt3 other downstream 1251397 53925942 ~ 53955130 (+)
G521914 NA other downstream 1595380 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 2205154 54793125 ~ 54954478 (+)
G523529 NA other downstream 2809704 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 2889203 55563439 ~ 55568167 (+)

Expression


Co-expression Network