Gene
RNA
| Item | Value |
|---|---|
| gene id | G520260 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 52905722 ~ 52905931 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: RNA-directed DNA polymerase homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU589977 | True | 210 | lncRNA | 0.53 | 1 | 52905722 | 52905931 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mapk8ip1b | LOC106587053 | coding | upstream | 260077 | 52524356 ~ 52645645 (+) |
| LOC110502468 | LOC106605670 | coding | upstream | 346810 | 52555005 ~ 52558912 (+) |
| otpb | LOC106587051 | coding | upstream | 515254 | 52385142 ~ 52390468 (+) |
| LOC110493840 | LOC106605670 | coding | upstream | 626313 | 52277694 ~ 52279409 (+) |
| homer1b | homer1 | coding | upstream | 898847 | 51883283 ~ 52006875 (+) |
| LOC118965081 | NA | coding | downstream | 160096 | 53066027 ~ 53067743 (+) |
| LOC110526152 | LOC106587056 | coding | downstream | 205209 | 53111140 ~ 53202399 (+) |
| LOC118965122 | NA | coding | downstream | 252980 | 53158911 ~ 53159015 (+) |
| LOC118965121 | NA | coding | downstream | 257164 | 53163095 ~ 53163203 (+) |
| LOC110526153 | LOC106587057 | coding | downstream | 448847 | 53354778 ~ 53759596 (+) |
| G520259 | NA | non-coding | upstream | 65 | 52905436 ~ 52905657 (+) |
| G519685 | LOC106587054 | non-coding | upstream | 231177 | 52670425 ~ 52674545 (+) |
| G519675 | NA | non-coding | upstream | 249263 | 52656204 ~ 52656459 (+) |
| G519602 | NA | non-coding | upstream | 256030 | 52648357 ~ 52649692 (+) |
| G519564 | NA | non-coding | upstream | 439532 | 52464049 ~ 52466190 (+) |
| G520505 | NA | non-coding | downstream | 182328 | 53088259 ~ 53088587 (+) |
| G520507 | NA | non-coding | downstream | 183435 | 53089366 ~ 53089634 (+) |
| G520508 | NA | non-coding | downstream | 184851 | 53090782 ~ 53091037 (+) |
| G520509 | LOC100136012 | non-coding | downstream | 185784 | 53091715 ~ 53092164 (+) |
| G520531 | NA | non-coding | downstream | 203208 | 53109139 ~ 53109367 (+) |
| G519603 | NA | other | upstream | 250425 | 52651940 ~ 52655297 (+) |
| LOC110526128 | NA | other | upstream | 1983625 | 50911697 ~ 50922106 (+) |
| LOC118964907 | NA | other | upstream | 2170486 | 50719208 ~ 50743120 (+) |
| barhl1a | barhl1 | other | upstream | 3153973 | 49748788 ~ 49753260 (+) |
| G521552 | prmt3 | other | downstream | 1020011 | 53925942 ~ 53955130 (+) |
| G521914 | NA | other | downstream | 1363994 | 54269925 ~ 54270259 (+) |
| LOC110526161 | LOC106587065 | other | downstream | 1973768 | 54793125 ~ 54954478 (+) |
| G523529 | NA | other | downstream | 2578318 | 55484249 ~ 55484607 (+) |
| LOC110526167 | LOC106587078 | other | downstream | 2657817 | 55563439 ~ 55568167 (+) |
