G520505



Basic Information


Item Value
gene id G520505
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53088259 ~ 53088587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU590234
catattttccaccataatttgcaaataaattgattacaaatcctacaatgagattttctggattttttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttttaagtaggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatttatgttagatcaccaccaaaaaaacacagccatttttcccagccaaagatagtcacaaagCAGAATtagcgataaaattaatcactaacctttgataatcttcatcagatgacactcatatgacatcatgttacac

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU590234 True 329 lncRNA 0.33 1 53088259 53088587

Neighbor


gene id symbol gene type direction distance location
LOC118965081 NA coding upstream 20516 53066027 ~ 53067743 (+)
mapk8ip1b LOC106587053 coding upstream 442614 52524356 ~ 52645645 (+)
LOC110502468 LOC106605670 coding upstream 529347 52555005 ~ 52558912 (+)
otpb LOC106587051 coding upstream 697791 52385142 ~ 52390468 (+)
LOC110493840 LOC106605670 coding upstream 808850 52277694 ~ 52279409 (+)
LOC110526152 LOC106587056 coding downstream 22553 53111140 ~ 53202399 (+)
LOC118965122 NA coding downstream 70324 53158911 ~ 53159015 (+)
LOC118965121 NA coding downstream 74508 53163095 ~ 53163203 (+)
LOC110526153 LOC106587057 coding downstream 266191 53354778 ~ 53759596 (+)
LOC110526155 LOC106587070 coding downstream 931525 54020112 ~ 54035663 (+)
G520260 NA non-coding upstream 182328 52905722 ~ 52905931 (+)
G520259 NA non-coding upstream 182602 52905436 ~ 52905657 (+)
G519685 LOC106587054 non-coding upstream 413714 52670425 ~ 52674545 (+)
G519675 NA non-coding upstream 431800 52656204 ~ 52656459 (+)
G519602 NA non-coding upstream 438567 52648357 ~ 52649692 (+)
G520507 NA non-coding downstream 779 53089366 ~ 53089634 (+)
G520508 NA non-coding downstream 2195 53090782 ~ 53091037 (+)
G520509 LOC100136012 non-coding downstream 3128 53091715 ~ 53092164 (+)
G520531 NA non-coding downstream 20552 53109139 ~ 53109367 (+)
G520560 NA non-coding downstream 57128 53145715 ~ 53154614 (+)
G519603 NA other upstream 432962 52651940 ~ 52655297 (+)
LOC110526128 NA other upstream 2166162 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 2353023 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 3336510 49748788 ~ 49753260 (+)
G521552 prmt3 other downstream 837355 53925942 ~ 53955130 (+)
G521914 NA other downstream 1181338 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 1791112 54793125 ~ 54954478 (+)
G523529 NA other downstream 2395662 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 2475161 55563439 ~ 55568167 (+)

Expression



Co-expression Network