G520661 (LOC106587056)


Basic Information

Item Value
gene id G520661
gene name LOC106587056
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53142215 ~ 53162922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU590396
agggcccatagggctctggtaaaagtaGTGAATTATATAGGTATtgggtgtaatttgggatgtaGCCTTGATACCCCAGTGACGGACCTTGAGGACGAGGTAGGGGATGAAGGAGTTGGCCTCCTGTTCACTGAGGTGGTAGTTGTGCTTGCTGAGGCTGAGGAAAAGGAGCTTCAGGTACTCCAGGGCCTTCATCAGCACACTGGTGTTTGTGTCAAAGAAGCGCAGCGTGTACCACTTCAGGACCAGGTCTAGGCAGGCCACCATTGCCTCGTGTTCTTCCTCCAGACACTCTATCATGGAGTTGATGGCCTTGATGTGGTGCTGGAAGTCATGGTGGAAGAGTTCCTCCTGAAGCCACTTGGCCACACAGGGAGCCATCTGAACTTTAAGCTGCTCCACATACTCATCGCGAGGAGACCCAAAGTTCCACTTTAACGTCTTCAAGCTCTTCTCATCTTTGACACGTAGATCCTTGCCGTTGGGCACCATGGTGAAGATGGGACCAGACTTGTCCTCCTCTTCTTTACCCTTACCCAAGGGCTTCTTCCCAGCAGCAGcCTTTCCTTTGGCCGGGAGTGCCCCTGGCTTGGCTTTCTTTGGGTCGGCAACTGCATATTCTTCAATGGGAGCCTGGGTTTTGCTCAAAGCTGCAAGGGCTTTGGCCGGGTGGACGCTGGATACAGGCTTGGTGGGGGCAGCTTTAGCAGGACCAGCTGATTTAGCAGGCATCACATCCCTGGCCTTGTCCAGCATGGCAACCACTTGGTCCTTAGAGGCAGGCTTCAGTTTGCCTGTGGCCTTGTTCATCTTGTCGAAGCCCAGGTGCATCATGAAGACAGGCAGGACATCCTGGGCTCGCTTCCTTACGTCAACGTTGCGGTCCTCCAGGCAGCCGAACAGGGGGGGCACACACAGCATGAGATCGGAGGGCACTGAGCGCATGGTGGGGAGATGCACTGCCAGCCAGCCAAGCACCTCCTGTCTGAGGAAAGGATTCTCCCTCTTCAGCTCTTCAGACAGCTCTTCTCCTTCCAGCCACTCCTTCataccagtctgctccacccaggaGTTCAGGGTGGCCATGGCCGCAGCACGAACTGTGTTCTTAATATCCCCCAGCACAGTGATGACTGGTATGCCCAGGGTCTTGACATGCTGTTTGAGGGCAGGGCCCATGGCAGTGGCCATCTGCTGCATGATCGACAGGGTCTGCTGGACCAGGATCTTGTTGGAGTCACTGAGGCGTCCCTTCAGTGTGATGGGCAGGTCTCCCAAGCTGGGCTTGATGAACTTGGCCTCAGAAAGAACTGCAGCCACCTCATTCAAACCCTCCTTACGGATAGTCCAGTTCTTATCGCCCACCTTCGACACCATGTCCTCTGTGATCTTATCACTGATGTCAGTGCGAGGCAGGAGGTCCATGATGTCACCTGCAACCCCTTCTTCCTtggcctcttctcc

Function

NR:

description
cytoskeleton-associated protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU590396 True 1464 TUCP 0.55 10 53142215 53162922

Neighbor

gene id symbol gene type direction distance location
lrp4 LOC106587054 coding downstream 250122 52673661 ~ 52892093 (-)
LOC110526151 LOC106609580 coding downstream 396627 52744519 ~ 52745588 (-)
LOC118965080 NA coding downstream 758885 52363668 ~ 52383330 (-)
tent2 papd4 coding downstream 1298874 51800346 ~ 51843341 (-)
cmya5 cmya5 coding downstream 1344568 51718652 ~ 51797647 (-)
LOC110526924 LOC106587063 coding upstream 665859 53828781 ~ 53888622 (-)
prmt3 prmt3 coding upstream 736145 53899067 ~ 54007283 (-)
LOC110526925 LOC106587060 coding upstream 962575 54125497 ~ 54370901 (-)
LOC118965035 NA coding upstream 1174197 54337119 ~ 54346075 (-)
si:ch211-210p4.6 LOC106587062 coding upstream 1222833 54385755 ~ 54402116 (-)
G520519 NA non-coding downstream 44308 53097139 ~ 53097907 (-)
G520510 NA non-coding downstream 49922 53092001 ~ 53092293 (-)
G520122 NA non-coding downstream 474540 52667413 ~ 52667675 (-)
G519873 LOC106587059 non-coding downstream 584552 52277474 ~ 52557663 (-)
G519944 LOC106587051 non-coding downstream 751829 52388627 ~ 52390386 (-)
G520735 NA non-coding upstream 102623 53265545 ~ 53265848 (-)
G520761 NA non-coding upstream 124813 53287735 ~ 53287952 (-)
G520768 NA non-coding upstream 131517 53294439 ~ 53294705 (-)
G521207 NA non-coding upstream 248678 53411600 ~ 53466748 (-)
G521306 NA non-coding upstream 388666 53551588 ~ 53551793 (-)
LOC110526143 LOC106587046 other downstream 1529970 51563139 ~ 51643817 (-)
G517877 NA other downstream 2220117 50911814 ~ 50922098 (-)
G517777 LOC106587028 other downstream 2490796 50636549 ~ 50740638 (-)
LOC110515945 LOC106585521 other downstream 3518472 49622196 ~ 49624916 (-)
G516320 LOC106585521 other downstream 3605930 49535215 ~ 49536285 (-)
G521438 NA other upstream 588194 53751116 ~ 53751623 (-)
G521441 NA other upstream 591127 53754049 ~ 53754538 (-)
G521418 NA other upstream 597311 53760233 ~ 53761885 (-)
G521468 NA other upstream 648791 53811713 ~ 53812038 (-)
G524834 NA other upstream 2805418 55968340 ~ 55969672 (-)

Expression


Co-expression Network