G520958


Basic Information

Item Value
gene id G520958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53557389 ~ 53557596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU590700
CATCTAATGTTCCTTTAACATTCTACTTCAGATGTACATGCCAGGCTCTAACTCACAGAGATGCAGAGCTTTTATCCATGCTCTTTCACCAAACCACCGTCTGCTATGCTTGTTCTTCAAATCAATCCTACTTCTGTATTTCTCTCTTATTTTAGCCAGTTAAGAATGTAGAGAATGGACAATATATGATTGGTAGACTGTACCACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU590700 True 208 lncRNA 0.39 1 53557389 53557596

Neighbor

gene id symbol gene type direction distance location
LOC110526152 LOC106587056 coding upstream 354990 53111140 ~ 53202399 (+)
LOC118965121 NA coding upstream 394186 53163095 ~ 53163203 (+)
LOC118965122 NA coding upstream 398374 53158911 ~ 53159015 (+)
LOC118965081 NA coding upstream 489646 53066027 ~ 53067743 (+)
mapk8ip1b LOC106587053 coding upstream 911744 52524356 ~ 52645645 (+)
LOC110526155 LOC106587070 coding downstream 462516 54020112 ~ 54035663 (+)
LOC110526157 LOC106587066 coding downstream 525149 54082745 ~ 54104736 (+)
brsk2b LOC106587064 coding downstream 894858 54452454 ~ 54639254 (+)
LOC110526161 LOC106587065 coding downstream 1235529 54793125 ~ 54954478 (+)
LOC118965082 NA coding downstream 1508604 55066200 ~ 55068243 (+)
G520760 NA non-coding upstream 270399 53286419 ~ 53286990 (+)
G520753 NA non-coding upstream 276159 53281018 ~ 53281230 (+)
G520560 NA non-coding upstream 402775 53145715 ~ 53154614 (+)
G520531 NA non-coding upstream 448022 53109139 ~ 53109367 (+)
G520509 LOC100136012 non-coding upstream 465225 53091715 ~ 53092164 (+)
G520959 NA non-coding downstream 280 53557876 ~ 53558084 (+)
G520976 NA non-coding downstream 16756 53574352 ~ 53574555 (+)
G520988 NA non-coding downstream 28881 53586477 ~ 53586682 (+)
G520990 NA non-coding downstream 31261 53588857 ~ 53589198 (+)
G520991 NA non-coding downstream 32305 53589901 ~ 53590103 (+)
G519603 NA other upstream 902092 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 1278391 52277694 ~ 52279409 (+)
LOC110526128 NA other upstream 2635292 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 2822153 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 3805640 49748788 ~ 49753260 (+)
G521552 prmt3 other downstream 368346 53925942 ~ 53955130 (+)
G521914 NA other downstream 712329 54269925 ~ 54270259 (+)
G523529 NA other downstream 1926653 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 2006152 55563439 ~ 55568167 (+)

Expression


Co-expression Network