G520990


Basic Information

Item Value
gene id G520990
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53588857 ~ 53589198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU590732
aacacaacaaacaagaatccgacaaggacaggagcaggaacagagagagatatagggacctaatcagagggaaacagggaacaggtgggaaaaggggtgacgaggtggttaggaggagacaaggcacagctgggggaaagagggggagaaaaggtaacctaacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacacaacatgacagtacatgacagtaccccccactcaccgagcgcctcctggcgcactcgaggaggaaacctggcggcaacggaggaaatcctcgatcagcgcacggtccagcacgtcccgagagggaaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU590732 True 342 lncRNA 0.56 1 53588857 53589198

Neighbor

gene id symbol gene type direction distance location
LOC110526152 LOC106587056 coding upstream 386458 53111140 ~ 53202399 (+)
LOC118965121 NA coding upstream 425654 53163095 ~ 53163203 (+)
LOC118965122 NA coding upstream 429842 53158911 ~ 53159015 (+)
LOC118965081 NA coding upstream 521114 53066027 ~ 53067743 (+)
mapk8ip1b LOC106587053 coding upstream 943212 52524356 ~ 52645645 (+)
LOC110526155 LOC106587070 coding downstream 430914 54020112 ~ 54035663 (+)
LOC110526157 LOC106587066 coding downstream 493547 54082745 ~ 54104736 (+)
brsk2b LOC106587064 coding downstream 863256 54452454 ~ 54639254 (+)
LOC110526161 LOC106587065 coding downstream 1203927 54793125 ~ 54954478 (+)
LOC118965082 NA coding downstream 1477002 55066200 ~ 55068243 (+)
G520988 NA non-coding upstream 2175 53586477 ~ 53586682 (+)
G520976 NA non-coding upstream 14302 53574352 ~ 53574555 (+)
G520959 NA non-coding upstream 30773 53557876 ~ 53558084 (+)
G520958 NA non-coding upstream 31261 53557389 ~ 53557596 (+)
G520760 NA non-coding upstream 301867 53286419 ~ 53286990 (+)
G520991 NA non-coding downstream 703 53589901 ~ 53590103 (+)
G520992 NA non-coding downstream 4173 53593371 ~ 53593738 (+)
G520996 NA non-coding downstream 7423 53596621 ~ 53596888 (+)
G521006 NA non-coding downstream 19622 53608820 ~ 53609033 (+)
G521010 NA non-coding downstream 23786 53612984 ~ 53613256 (+)
G519603 NA other upstream 933560 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 1309859 52277694 ~ 52279409 (+)
LOC110526128 NA other upstream 2666760 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 2853621 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 3837108 49748788 ~ 49753260 (+)
G521552 prmt3 other downstream 336744 53925942 ~ 53955130 (+)
G521914 NA other downstream 680727 54269925 ~ 54270259 (+)
G523529 NA other downstream 1895051 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 1974550 55563439 ~ 55568167 (+)

Expression


Co-expression Network