Fish Transcriptome and Expression Database

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model fish

XLOC_024375 (CU861469.1)

Basic Information

Item	Value
gene id	XLOC_024375
gene name	CU861469.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007136.7
NCBI id	CM002909.2
chromosome length	37502051
location	1195282 ~ 1196112 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048198
attgAGAAGGGTATAAACGGAGGCCGGAGCCAGCTCCAAGTTGGTGGGTCttggagctccaagtgggctgggCAAACcttatttaggtTGTATTTAGACTTGAATATTGTTCTTTATGAAATTGTacacctaaccctaaacccaacctcacagtaac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000099253

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00048198	True	157	lncRNA	0.45	2	1195282	1196112

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_024374	spg11	coding	downstream	68971	1088693 ~ 1126311 (-)
XLOC_024373	FO907089.1	coding	downstream	115865	1047627 ~ 1079417 (-)
XLOC_024372	znf609a	coding	downstream	197186	821725 ~ 998096 (-)
XLOC_024371	irak4	coding	downstream	420811	768014 ~ 774471 (-)
XLOC_024370	tmem117	coding	downstream	443124	710139 ~ 752158 (-)
XLOC_024376	coro2bb	coding	upstream	24167	1220279 ~ 1235457 (-)
XLOC_024377	calml4b	coding	upstream	70833	1266945 ~ 1323928 (-)
XLOC_024378	cln6b	coding	upstream	129834	1325946 ~ 1334504 (-)
XLOC_024379	itga11b	coding	upstream	147049	1343161 ~ 1426876 (-)
XLOC_024380	CR354429.1	coding	upstream	268267	1464379 ~ 1471185 (-)
XLOC_024369	NA	non-coding	downstream	552176	630933 ~ 643106 (-)
XLOC_024366	NA	non-coding	downstream	738804	455319 ~ 456478 (-)
XLOC_024363	NA	non-coding	downstream	831514	360538 ~ 363768 (-)
XLOC_024361	NA	non-coding	downstream	889625	305008 ~ 305657 (-)
XLOC_024360	NA	non-coding	downstream	900673	287659 ~ 294609 (-)
XLOC_024381	NA	non-coding	upstream	428768	1624880 ~ 1625918 (-)
XLOC_024382	dre-let-7i	non-coding	upstream	433543	1629655 ~ 1629749 (-)
XLOC_024385	NA	non-coding	upstream	750256	1946368 ~ 1951444 (-)
XLOC_024386	CR385026.2	non-coding	upstream	777412	1973524 ~ 1974290 (-)

Expression

Co-expression Network