G521039


Basic Information

Item Value
gene id G521039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 53666840 ~ 53667084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU590781
caacaggtgtaaaccttacagtgaaatgcttgccaACCTTGCGACCTCAAGGTTGGCAAGTATTGTGTCTTGGTAAACACAGAGTGCACTCACTTCTCACAGTTAACACACAACTCTCACAGTGCCAAAGTaggccagattaatcctctcaGTTTGTTTTAGTTGGAGATTTGTACAAAACTACAGAACAGGAGCAGTACAACGTTTCTCAGagaaggagtgctgatttaggatcagtttagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU590781 True 245 lncRNA 0.43 1 53666840 53667084

Neighbor

gene id symbol gene type direction distance location
LOC110526152 LOC106587056 coding upstream 464441 53111140 ~ 53202399 (+)
LOC118965121 NA coding upstream 503637 53163095 ~ 53163203 (+)
LOC118965122 NA coding upstream 507825 53158911 ~ 53159015 (+)
LOC118965081 NA coding upstream 599097 53066027 ~ 53067743 (+)
mapk8ip1b LOC106587053 coding upstream 1021195 52524356 ~ 52645645 (+)
LOC110526155 LOC106587070 coding downstream 353028 54020112 ~ 54035663 (+)
LOC110526157 LOC106587066 coding downstream 415661 54082745 ~ 54104736 (+)
brsk2b LOC106587064 coding downstream 785370 54452454 ~ 54639254 (+)
LOC110526161 LOC106587065 coding downstream 1126041 54793125 ~ 54954478 (+)
LOC118965082 NA coding downstream 1399116 55066200 ~ 55068243 (+)
G521035 NA non-coding upstream 5136 53661472 ~ 53661704 (+)
G521032 NA non-coding upstream 7557 53659015 ~ 53659283 (+)
G521024 NA non-coding upstream 19216 53647397 ~ 53647624 (+)
G521019 NA non-coding upstream 26782 53639779 ~ 53640058 (+)
G521010 NA non-coding upstream 53584 53612984 ~ 53613256 (+)
G521044 NA non-coding downstream 5431 53672515 ~ 53672718 (+)
G521047 NA non-coding downstream 9093 53676177 ~ 53676412 (+)
G521051 NA non-coding downstream 11113 53678197 ~ 53678478 (+)
G521054 NA non-coding downstream 13968 53681052 ~ 53681313 (+)
G521060 NA non-coding downstream 23900 53690984 ~ 53691232 (+)
G519603 NA other upstream 1011543 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 1387842 52277694 ~ 52279409 (+)
LOC110526128 NA other upstream 2744743 50911697 ~ 50922106 (+)
LOC118964907 NA other upstream 2931604 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 3915091 49748788 ~ 49753260 (+)
G521552 prmt3 other downstream 258858 53925942 ~ 53955130 (+)
G521914 NA other downstream 602841 54269925 ~ 54270259 (+)
G523529 NA other downstream 1817165 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 1896664 55563439 ~ 55568167 (+)

Expression


Co-expression Network