G522068


Basic Information

Item Value
gene id G522068
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54269626 ~ 54270208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU591865
gcagttttcagttctttccacagattctcgattgtattcaggtctggactttgacttggccattctaacacctggatatgtttattttttaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctaaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggaatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtcgcttgtggcaaactttaaacgacacattttatggatatctttaagaaatggctttcttgccactcttccataaaggccagatttgtgcaatatatgactgattgttgtcctatggacagagtctcccacctcagctgtag

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU591865 True 583 lncRNA 0.42 1 54269626 54270208

Neighbor

gene id symbol gene type direction distance location
prmt3 prmt3 coding downstream 262343 53899067 ~ 54007283 (-)
LOC110526924 LOC106587063 coding downstream 381004 53828781 ~ 53888622 (-)
lrp4 LOC106587054 coding downstream 1377533 52673661 ~ 52892093 (-)
LOC110526151 LOC106609580 coding downstream 1524038 52744519 ~ 52745588 (-)
LOC118965080 NA coding downstream 1886296 52363668 ~ 52383330 (-)
LOC118965035 NA coding upstream 66911 54337119 ~ 54346075 (-)
si:ch211-210p4.6 LOC106587062 coding upstream 115547 54385755 ~ 54402116 (-)
LOC110526926 rassf7 coding upstream 140002 54410210 ~ 54424635 (-)
LOC110526159 LOC106587061 coding upstream 369121 54639329 ~ 54669756 (-)
si:ch211-288d18.1 LOC106587068 coding upstream 403306 54673514 ~ 54712464 (-)
G521794 NA non-coding downstream 213656 54055597 ~ 54055970 (-)
G521792 NA non-coding downstream 214920 54054240 ~ 54054706 (-)
G521779 NA non-coding downstream 230252 54038847 ~ 54039374 (-)
G521778 NA non-coding downstream 231628 54037567 ~ 54037998 (-)
G521772 LOC106561904 non-coding downstream 239359 54029971 ~ 54030267 (-)
G522080 NA non-coding upstream 17460 54287668 ~ 54288074 (-)
G522137 NA non-coding upstream 59986 54330194 ~ 54330743 (-)
G522170 NA non-coding upstream 84523 54354731 ~ 54354990 (-)
G522174 NA non-coding upstream 87417 54357625 ~ 54357851 (-)
G522258 NA non-coding upstream 155761 54425969 ~ 54426176 (-)
G521468 NA other downstream 457588 53811713 ~ 53812038 (-)
G521418 NA other downstream 507741 53760233 ~ 53761885 (-)
G521441 NA other downstream 515088 53754049 ~ 53754538 (-)
G521438 NA other downstream 518003 53751116 ~ 53751623 (-)
G520661 LOC106587056 other downstream 1106704 53142215 ~ 53162922 (-)
G524834 NA other upstream 1698132 55968340 ~ 55969672 (-)
G525008 LOC106561927 other upstream 1897223 56167431 ~ 56302651 (-)
LOC110526187 LOC106587097 other upstream 2637366 56893209 ~ 56947117 (-)
G526016 NA other upstream 2876690 57146898 ~ 57147224 (-)
ccnd1 LOC106587137 other upstream 3685200 57955388 ~ 57962808 (-)

Expression


Co-expression Network