G522480


Basic Information

Item Value
gene id G522480
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 54778993 ~ 54779572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU592298
AATTGAAATGGCCAATTCTCCAAAGCAAGCTACAACTGGCTTTGGAGGCAGATCAGATCGCCTTCAAACTAGGCAGAGTGCCTGTAACTTGGACAAAGCGTCAATGAGTCCTCACACGGCTATCTTACTCTCCTGAAACGACCCATCTGGACAGGTTAAATGTCCAGCCTTTAACTCtggaatagtaaaaaaaataaaaaaatgcacaTAAACAGTAAATGACAATCAATAAATGTATACATTGATATGTCATTCATATCAGGGACAGAATATTACAAACATTTAACAAATAACGATattaggaagaaaaaaaaaacatcaacatcGAACATTCCTTTTGAGCGTGTGCTCCTGCTAGATACTGTAACTATGTCGACCTGACCGGCGCATGCTCTCGTAATCAATCCTCAAGCAATCCGCAGTGGTGAGTAGACGAGACCTACAGGTTGGTAATACAAATGTAACTTTAAACTCTAAACGATGTTATAATTTATATGATTTACAGTATGTTGTGATACATTTTGTGTTGGAACTGTGGGATGTGTTTGGTGATAGAGTTGAAAACGATAAACCAACGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU592298 True 580 lncRNA 0.38 1 54778993 54779572

Neighbor

gene id symbol gene type direction distance location
brsk2b LOC106587064 coding upstream 139739 54452454 ~ 54639254 (+)
LOC110526157 LOC106587066 coding upstream 674257 54082745 ~ 54104736 (+)
LOC110526155 LOC106587070 coding upstream 743330 54020112 ~ 54035663 (+)
LOC110526153 LOC106587057 coding upstream 1019397 53354778 ~ 53759596 (+)
LOC118965121 NA coding upstream 1615790 53163095 ~ 53163203 (+)
LOC110526161 LOC106587065 coding downstream 13553 54793125 ~ 54954478 (+)
LOC118965082 NA coding downstream 286628 55066200 ~ 55068243 (+)
LOC110526162 NA coding downstream 347484 55127056 ~ 55135622 (+)
LOC110526930 LOC106561912 coding downstream 572157 55351729 ~ 55364742 (+)
LOC110526163 LOC106587071 coding downstream 595524 55375096 ~ 55448136 (+)
G522492 NA non-coding upstream 16394 54762388 ~ 54762599 (+)
G522451 NA non-coding upstream 29205 54749305 ~ 54749788 (+)
G522430 NA non-coding upstream 99963 54675894 ~ 54679030 (+)
G522387 LOC106587068 non-coding upstream 104132 54670439 ~ 54674861 (+)
G522503 NA non-coding downstream 1181 54780753 ~ 54781190 (+)
G522506 NA non-coding downstream 4970 54784542 ~ 54784784 (+)
G522510 NA non-coding downstream 9937 54789509 ~ 54789736 (+)
G523053 NA non-coding downstream 241825 55021397 ~ 55021641 (+)
G523060 NA non-coding downstream 248087 55027659 ~ 55027916 (+)
G521914 NA other upstream 508734 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 823863 53925942 ~ 53955130 (+)
G519603 NA other upstream 2123696 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 2499995 52277694 ~ 52279409 (+)
LOC110526128 NA other upstream 3856896 50911697 ~ 50922106 (+)
G523529 NA other downstream 704677 55484249 ~ 55484607 (+)
LOC110526167 LOC106587078 other downstream 784176 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 other downstream 1134771 55904064 ~ 55916081 (+)
LOC110526175 LOC106587084 other downstream 1330707 56020625 ~ 56120747 (+)

Expression


Co-expression Network