XLOC_024384 (SLC6A13)


Basic Information

Item Value
gene id XLOC_024384
gene name SLC6A13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 1695547 ~ 1720736 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048216
ATGGAGCCGTCGAATGGGCTGAACCGGCCGCTGGAGATCGTCCCGCACGCCGAGGTGAAGATGAAGGACAGAGGACAGTGGAGCAACAAGCTGGAGTTTGTGCTGTCTGTGGCTGGGGAAATCATCGGCTTGGGGAACGTCTGGAGATTTCCGTATCTCTGCTACAAGAACGGCGGAGGTGCTTTCTTCATCCCCTACCTGATCTTTCTGTTCACCTGCGGCATTCCTGTGTTTTTCCTGGAAATTTCTCTGGGTCAGTACACCAGTGAAGGAGGAATCACATGCTGGAGGAAGATCAGCCCGCTCTTTGAAGGAATCGGATACGCCACGCAGGTGATAGTGGCTCTGCTGAACTTCTACTACATCATCGTGCTGGCCTGGGGAATATTTTACCTGTCCAACTCCTTCACCTGGAATTTGCCGTGGTCATCCTGCAACAACACCTGGAACACAGAGTCCTGCATGGAATTCCAAAGACGGAATGATTCTGTTGACCAAAGTTACCTTGACAACGCCACATCACCTGTGATCGAATTCTGGGAACGGAGGGTTCTGCGCATCTCGTCTGGGATCGAGGACATCGGGACACTGCACTGGGATCTGGTTCTCTGTCTGCTGTTAGCTTGGGTTCTCTGTTATTTCTGCATCTGGAAAGGAGTCAAATCCACCGGAAAGGTGGTTTATTTCACTGCTACATTTCCATACGTGATGCTGCTGATTTTGCTGATCCGAGGGGTCACACTGCCCGGAGCTTCACGAGGAATCCAGTTCTACCTTTATCCCGATCTGGGACGCTTAGCAGATCCACAGGTGTGGATGGACGCCGGTACGCAGATCTTCTTCTCGTACGCCATCTGTCTGGGTTGCCTCACGGCGCTTGGAAGCTacaacaaatacaacaacaactgcTACAGGGACTCTCTGGCCCTGTGTTTCCTGAACAGCGGGACCAGTTTTGTGGCCGGTTTTGCCATTTTCTCCATCCTAGGCTTCATGTCTTACGAACAAAATGTCCCCATTTCAGAAGTGGCCGAGTCAGGTCCTGGTCTGGCGTTTATCGCATACCCGCGGGCCGTGTCCATGATGCCCATCTCTCCACTGTGGGCCTGTTTCTTCTTCATCATGATTGTACTGCTGGGTTTGGACAGTCAGtttgtgtgtgtggagagTCTGGTGACGGCGATGGTGGACATGTATCCATCTTTCTTCCGCCGTAAGAACCGACGGGAGCTGCTGATCCTGGTGGTGGCCATCGTGTCCTTCCTTGTGGGCCTTATCATGCTGACTGAGGGAGGAATGTATGTCTTCCAGCTGTTCGACTATTACGCTGCCAGCGGCATGTGTCTGCTGTTTGTGGCCATCTTCGAGACCGTCTGCATTGCCTGGATTTATGGTGCGAATCGTTTCTATGATAACATCGAGGACATGATTGGTTATCGTCCTGGCCCATATATTAAATACTGCTGGCTCTTCTTCACTCCAGCCACATGTTTTGGCACGTTCGCGTTCTCTCTGATCAAGTACACTCCGCTGAAGTATAACAATGAGTATGTGTACCCGTGGTGGGGTTACGCGCTGGGCTGGATGCTGGCTCTGTCTTCCATGATCTGTGTGCCGCTCTGGGTCATTTACAGAATGGGCACTACTAAAGGGTCATTGATGGAGCGTGTGCAGTTTCTCATCCGGCCGTCTCCAGATCTGCCCAAAAGCCGACGCGAGCAGGAGAAGCTGCAGGCGGTGTTTTCAGCAGACGGAGACTCTCTGCATcagcacagcacacacacacactcacacacacacaacagagacGGATATTTCCCTGTTAGAGAGAAAGAGTCGCACTGTTAG

Function

symbol description
slc6a13 Orthologous to human SLC6A13 (solute carrier family 6 member 13).

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04721 Synaptic vesicle cycle
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-170607-2 Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDARG00000067567

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048216 True 1848 mRNA 0.52 14 1695547 1720736

Neighbor

gene id symbol gene type direction distance location
XLOC_024383 mon2 coding downstream 8066 1631828 ~ 1687481 (-)
XLOC_024382 dre-let-7i coding downstream 65798 1629655 ~ 1629749 (-)
XLOC_024381 NA coding downstream 69629 1624880 ~ 1625918 (-)
XLOC_024380 CR354429.1 coding downstream 224362 1464379 ~ 1471185 (-)
XLOC_024379 itga11b coding downstream 268671 1343161 ~ 1426876 (-)
XLOC_024385 NA coding upstream 225632 1946368 ~ 1951444 (-)
XLOC_024386 CR385026.2 coding upstream 252788 1973524 ~ 1974290 (-)
XLOC_024387 wnt7bb coding upstream 281979 2002715 ~ 2081371 (-)
XLOC_024388 CR385026.1 coding upstream 291941 2012677 ~ 2013391 (-)
XLOC_024389 NA coding upstream 406080 2126816 ~ 2165034 (-)
XLOC_024375 CU861469.1 non-coding downstream 499435 1195282 ~ 1196112 (-)
XLOC_024369 NA non-coding downstream 1052441 630933 ~ 643106 (-)
XLOC_024390 NA non-coding upstream 554789 2275525 ~ 2299749 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000127_00787687_00803143 NA coding CI01000127 null 787614 ~ 803143 (-)
bowfin (Amia calva) AMCG00006850 NA coding CM030134.1 CM030134.1 22754688 ~ 22772629 (+)