G523689


Basic Information

Item Value
gene id G523689
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55535782 ~ 55536838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593578
gagtctctttgtaggcagcagcctctctgagttagtgataattgtttagcagtctgatggccttgagatataagctgtttttcagtctctcggtctaagctttgatgcacctgtactgacctcaccttctggatgatagcggggtgaacaggcagtggcttggttggttgttgtcctcgatcatctttttggccttcctgtgacatcgggtgctgtaggtgtcctggagggcaggtagtttgcccccagtgatgggttgtgcagaccgcaccatcctctggagagccttgcagttgaggacggtgcagttgccgtacaaggcgatgatacagcccgacaggatgttctcagttgtgtatctgtaaaagtttgtcagggttttaggtgacaagtcaaatttcttcagcctcctgaggttgaagaggcgctgttgcaccttcttcaccaaactgtctgtgtaggtggaccatttcagtttgtctgtcatGTGTACGCCGAAGaccttaaaactttccaccttctccactactgtcccttcgatgtggataggggggtgctccctctgctgtttcctgaagtccacaatcatctcctttgttttgttgatgttgagtgagaggttgatttcctgacaccacactccgagtgccctcacctctgtaggctgtctcgttgttgttggtaatcaagcccactactgttgtgtcgtctgcaaacttgatgattgagttggaggcgtgcatggccatgcagtcatgggtgaacagagagtacaggagggggctgagcacgcacccttgtggggccccagtgttgagggtcagtgaaatggagatgttgtttcctaccttcaccacctgggggcggcccgtcagaaagtccaggacccagttgcacagggcggggttgagacccagggcctctcgcttaatgatgagcttggatacTACCTTGGTGtttaatgctgagctgtagtcaatgaacagaattcttgcataggtattcctcttgtccaaatgggatagggcagtgtgatggcgattgcatcatctgtgga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593578 True 1057 lncRNA 0.51 1 55535782 55536838

Neighbor

gene id symbol gene type direction distance location
LOC110526163 LOC106587071 coding upstream 87646 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 171040 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 400160 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 467539 55066200 ~ 55068243 (+)
LOC110526161 LOC106587065 coding upstream 581304 54793125 ~ 54954478 (+)
LOC110526167 LOC106587078 coding downstream 26601 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 coding downstream 367226 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 428384 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 434602 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 445432 55982270 ~ 55990919 (+)
G523660 NA non-coding upstream 22345 55513216 ~ 55513437 (+)
G523553 NA non-coding upstream 24507 55510965 ~ 55511275 (+)
G523549 NA non-coding upstream 29216 55506280 ~ 55506566 (+)
G523520 NA non-coding upstream 63109 55471755 ~ 55472673 (+)
G523490 NA non-coding upstream 80921 55401332 ~ 55454861 (+)
G523696 NA non-coding downstream 6562 55543400 ~ 55543667 (+)
G523700 NA non-coding downstream 9739 55546577 ~ 55546965 (+)
G523709 NA non-coding downstream 16031 55552869 ~ 55553110 (+)
G523719 NA non-coding downstream 22331 55559169 ~ 55559485 (+)
G523721 NA non-coding downstream 25644 55562482 ~ 55562802 (+)
G523529 NA other upstream 51175 55484249 ~ 55484607 (+)
G521914 NA other upstream 1265523 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1580652 53925942 ~ 53955130 (+)
G519603 NA other upstream 2880485 52651940 ~ 52655297 (+)
LOC110526175 LOC106587084 other downstream 573441 56020625 ~ 56120747 (+)
G525645 NA other downstream 2039246 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 2067270 57604108 ~ 57606367 (+)

Expression


Co-expression Network