XLOC_024387 (wnt7bb)


Basic Information

Item Value
gene id XLOC_024387
gene name wnt7bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2002715 ~ 2081371 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048218
GTTGAGCCTCGATGCCTTTCATTTGCGGTCCGTGCATTCGGAGCACGTGTTTCAAGCACtgtaaaaaggaaagaaaaaaaagctctCATCTGCGAGCGTAAAGCCGAAGGGGCGTGGATAAAGGCTTGAGTTACCTGCCCTAGACTTTCACCTGCGGAGAAATGGAAAGAATTCAGCACAGCAGCAGCAGTGGCAGTCGACGAGAACATAAAACCGTCGGCATTCCATCACACGCAtaaagagagggagagggagaaaagaggaggaggaagTCGACAGGTTCACCTGAAAACATTGGGACTCGCTCCTCCTTGAAAACCCAGTGTCTGTAAGCCTAGATCTGCTTTTTGGAAGGCAGGACAGGACGGTGAAGCATCCTGACTATGGCTCTCGGGTTTCTGACTGCAGCGGGAATCAGAAAGACGCGTCGGAGAGACAGAAAGAGCGTGTTTACCTGCGCAGGTGGAATGATGTGAGCTGGATTTCTGCATTGATCGGACATCATGGTCAGACCCCTACGCTTGTGGATCTTTAACGTGCTGCTGTGTTTCGGCATTATCTATTCCAGACTCGGGGCTCTTTCCTCAGTGGTGGCTCTCGGTGCGAACATCATCTGCAATAAGATTCCGGGTCTCGCCCCCCGTCAGCGCGCCATCTGCCAGAGCCGGCCGGACGCCATCATCGTGATCGGAGAAGGAGCGCAGCTGGGCATTAACGAATGCCAGTACCAGTTCAGATACGGCCGCTGGAACTGTTCAGCGTTGGGCGAACGCACCGTCTTCGGCCAGGAGCTGCGAGTAGGCAGCAGGGAGGCGGCATTCACCTACGCCATCACCGCTGCTGGGGTCGCCCACGCCGTGACGGCCGCATGCAGCCAGGGCAACATGAGCCACTGCGGCTGCGACAGGGAAAAACAGGGCTACTACAACCAGGAGGAGGGCTGGAAATGGGGCGGATGTTCTGCTGATATTAAATACGGCATCGAGTTCTCACGGAAGTTTGTGGATGCTCGGGAGATTAAAAAAAATGCCAGACGGCTGATGAACCTACATAACAATGAAGCCGGGAGAAAGGTTTTGGAAGAGCGAATGAAGCTGGAATGTAAATGTCACGGCGTTTCGGGCTCCTGCACCACCAAAACATGTTGGACCACATTACCGAAGTTCCGCGAAATCGGCTACGTCTTAAAGGACAAGTACAACAAAGCGGTTCAAGTAGAGGTGGTTCGTGCCTCGCGTCTGCGCCAGCCGACCTTCCTCAAGGTGAAGAGGACGCGTCACCAAAAGCCCTTAGAAACAGACTTGGTGTACATCGAGCGTTCGCCCAATTACTGCGAGGAGGACGCCAAAACGGGCAGCGTGGGGACGCAGGGGAGACTCTGCAACCGGACATCGCCACATACAGACGGCTGCGACCTCATGTGCTGCGGCCGAGGATACAACACACATCAATACACAAAAGTGTGGCAATGCAACTGTAAATTCCAGTGGTGCTGTTTTGTGAAATGCAACACCTGCAGCGAGAGGACGGAGGTGTTTACCTGCAAATGAACAATGCACGGgaagccagtttttttttttttttttttgcacagcagAATGTATATTTGCTTTAACCCAGAGTTAAAATACTAAACTCTTATCAGTAGGTACAAACCCAGAGGTTCGTGCACTGACTCGCGCTAAAGGACTGCAGGACACCGGTGCATGCTGGGATTTGTTGTGTGCTGGTTTCTCCATAGGAAGGGATAACGCCGCACAAAGGAACTTGTTGAGTTGTGTTTAAGGAGCTCAGTGCAAATCGAGGATGTATAAAAACTGGAACCTGGTAGAGTATGTTTAGTTATCCAGTCACACTGGATCTGTCTGTTTgaacactgaaaataaattattattatatattatatgttatagtCTCCTAAGGAACCGAAGTGCTAACGGGtagaaatgtgttattttgtACTAAGTGGAAACAAAGACTTTTGTAGAAGCACGTGACTGAAGATGTCTTATAGAGGGAATCGAAAAGCCCCGTCAGAAACGTTTAATGCCTAATGATGTGTTGATTTCCGAAACCACTGtcatatttgatttgatttcatcGGCTGATGCATGTTAACATGGGTTCATCTTTGCTGTAATCTAGCCGTAGTTCTCAGTAAGGTATGCGGTAGACATTTGGgccacttttgttttttgtttcgttTCAGCGTAGTTAAACAAGTGTCAATGATTCAAAGATCCTTCCTCAGTTGATGAAATGTGGAACGAGTATATTTCTGGATATGTTACAGAGTGCTGCACTGATATTTTTTCTATTCAGATACGAtgcaattaaaagtaaaataaatatcaaGTTGAATTACATTTGGCATGTTATTGCTGGAAAGAAATATATTCTGGGTTCTGAAAGGCTGTTCAGCATTAAAACTAtgttaatatttacaaatatgaaaatttttaaatgtattacatagtaagataaaactaaacaaatttgTTAACTgacaaatataatattacaaatattcaaaACATATTAGAACGTTACAGTTTATAGTTGTATTTAACACGTaatatgtgtttcccagtgatgggttgcagctggaagggcatccgctgagtaaaacatctgctggataagctggcagttcattttgctgtggcgacccctgattaataaagggactaaggtgaaaagaaaataaacgaatgaatgcaATCTGTAACAATAAACATAACCCACTGCAAATTTttgaaatacaatatatatatatatatatatatatatatatatatatgcgttttGATGAAATATTGCATAGTATTACTGca
>TCONS_00048219
GTTGAGCCTCGATGCCTTTCATTTGCGGTCCGTGCATTCGGAGCACGTGTTTCAAGCACtgtaaaaaggaaagaaaaaaaagctctCATCTGCGAGCGTAAAGCCGAAGGGGCGTGGATAAAGGCTTGAGTTACCTGCCCTAGACTTTCACCTGCGGAGAAATGGAAAGAATTCAGCACAGCAGCAGCAGTGGCAGTCGACGAGAACATAAAACCGTCGGCATTCCATCACACGCAtaaagagagggagagggagaaaagaggaggaggaagTCGACAGGTTCACCTGAAAACATTGGGACTCGCTCCTCCTTGAAAACCCAGTGTCTGTAAGCCTAGATCTGCTTTTTGGAAGGCAGGACAGGACGGTGAAGCATCCTGACTATGGCTCTCGGGTTTCTGACTGCAGCGGGAATCAGAAAGACGCGTCGGAGAGACAGAAAGAGCGTGTTTACCTGCGCAGGTGGAATGATGTGAGCTGGATTTCTGCATTGATCGGACATCATGGTCAGACCCCTACGCTTGTGGATCTTTAACGTGCTGCTGTGTTTCGGCATTATCTATTCCAGACTCGGTCCGTCAGAAAAGGCGTCGGATCGCTCCATATGTCACCATGATCCTCTTCTCGTCGCGCAGTGTGCTGCTGTCTGTCTATTATCCGCAGATCTTCCTCATCCTCACCAGCGGGAGCTACCTGGCTCTTTCCTCAGTGGTGGCTCTCGGTGCGAACATCATCTGCAATAAGATTCCGGGTCTCGCCCCCCGTCAGCGCGCCATCTGCCAGAGCCGGCCGGACGCCATCATCGTGATCGGAGAAGGAGCGCAGCTGGGCATTAACGAATGCCAGTACCAGTTCAGATACGGCCGCTGGAACTGTTCAGCGTTGGGCGAACGCACCGTCTTCGGCCAGGAGCTGCGAGTAGGCAGCAGGGAGGCGGCATTCACCTACGCCATCACCGCTGCTGGGGTCGCCCACGCCGTGACGGCCGCATGCAGCCAGGGCAACATGAGCCACTGCGGCTGCGACAGGGAAAAACAGGGCTACTACAACCAGGAGGAGGGCTGGAAATGGGGCGGATGTTCTGCTGATATTAAATACGGCATCGAGTTCTCACGGAAGTTTGTGGATGCTCGGGAGATTAAAAAAAATGCCAGACGGCTGATGAACCTACATAACAATGAAGCCGGGAGAAAGGTTTTGGAAGAGCGAATGAAGCTGGAATGTAAATGTCACGGCGTTTCGGGCTCCTGCACCACCAAAACATGTTGGACCACATTACCGAAGTTCCGCGAAATCGGCTACGTCTTAAAGGACAAGTACAACAAAGCGGTTCAAGTAGAGGTGGTTCGTGCCTCGCGTCTGCGCCAGCCGACCTTCCTCAAGGTGAAGAGGACGCGTCACCAAAAGCCCTTAGAAACAGACTTGGTGTACATCGAGCGTTCGCCCAATTACTGCGAGGAGGACGCCAAAACGGGCAGCGTGGGGACGCAGGGGAGACTCTGCAACCGGACATCGCCACATACAGACGGCTGCGACCTCATGTGCTGCGGCCGAGGATACAACACACATCAATACACAAAAGTGTGGCAATGCAACTGTAAATTCCAGTGGTGCTGTTTTGTGAAATGCAACACCTGCAGCGAGAGGACGGAGGTGTTTACCTGCAAATGAACAATGCACGGgaagccagtttttttttttttttttttgcacagcagAATGTATATTTGCTTTAACCCAGAGTTAAAATACTAAACTCTTATCAGTAGGTACAAACCCAGAGGTTCGTGCACTGACTCGCGCTAAAGGACTGCAGGACACCGGTGCATGCTGGGATTTGTTGTGTGCTGGTTTCTCCATAGGAAGGGATAACGCCGCACAAAGGAACTTGTTGAGTTGTGTTTAAGGAGCTCAGTGCAAATCGAGGATGTATAAAAACTGGAACCTGGTAGAGTATGTTTAGTTATCCAGTCACACTGGATCTGTCTGTTTgaacactgaaaataaattattattatatattatatgttatagtCTCCTAAGGAACCGAAGTGCTAACGGGtagaaatgtgttattttgtACTAAGTGGAAACAAAGACTTTTGTAGAAGCACGTGACTGAAGATGTCTTATAGAGGGAATCGAAAAGCCCCGTCAGAAACGTTTAATGCCTAATGATGTGTTGATTTCCGAAACCACTGtcatatttgatttgatttcatcGGCTGATGCATGTTAACATGGGTTCATCTTTGCTGTAATCTAGCCGTAGTTCTCAGTAAGGTATGCGGTAGACATTTGGgccacttttgttttttgtttcgttTCAGCGTAGTTAAACAAGTGTCAATGATTCAAAGATCCTTCCTCAGTTGATGAAATGTGGAACGAGTATATTTCTGGATATGTTACAGAGTGCTGCACTGATATTTTTTCTATTCAGATACGAtgcaattaaaagtaaaataaatatcaaGTTGAATTACA

Function

symbol description
wnt7bb Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in several processes, including canonical Wnt signaling pathway; neuron differentiation; and positive regulation of JNK cascade. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; midbrain neural rod; presumptive diencephalon; and presumptive telencephalon. Orthologous to human WNT7B (Wnt family member 7B).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081006-1 Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in several processes, including canonical Wnt signaling pathway; neuron differentiation; and positive regulation of JNK cascade. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; midbrain neural rod; presumptive diencephalon; and presumptive telencephalon. Orthologous to human WNT7B (Wnt family member 7B).

Ensembl:

ensembl_id ENSDARG00000071107

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048218 False 2834 mRNA 0.45 4 2002715 2081371
TCONS_00048219 True 2487 mRNA 0.49 5 2003183 2081371

Neighbor

gene id symbol gene type direction distance location
XLOC_024386 CR385026.2 coding downstream 28425 1973524 ~ 1974290 (-)
XLOC_024385 NA coding downstream 51271 1946368 ~ 1951444 (-)
XLOC_024384 SLC6A13 coding downstream 281979 1695547 ~ 1720736 (-)
XLOC_024383 mon2 coding downstream 315234 1631828 ~ 1687481 (-)
XLOC_024382 dre-let-7i coding downstream 372966 1629655 ~ 1629749 (-)
XLOC_024389 NA coding upstream 45445 2126816 ~ 2165034 (-)
XLOC_024390 NA coding upstream 194154 2275525 ~ 2299749 (-)
XLOC_024391 NA coding upstream 228043 2309414 ~ 2313033 (-)
XLOC_024392 mrps35 coding upstream 251887 2333258 ~ 2355107 (-)
XLOC_024393 NA coding upstream 401741 2483112 ~ 2485048 (-)
XLOC_024381 NA non-coding downstream 376797 1624880 ~ 1625918 (-)
XLOC_024380 CR354429.1 non-coding downstream 531530 1464379 ~ 1471185 (-)
XLOC_024394 BX957346.1 non-coding upstream 464972 2546343 ~ 2638817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006842 LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539 coding CM030134.1 CM030134.1 22400094 ~ 22447422 (+)