XLOC_024390


Basic Information

Item Value
gene id XLOC_024390
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2275525 ~ 2299749 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049072
GCCTCCAAATGTcggaaatatttatcatttctaagCATGGTCTTTCAGACCGAAGACGTCCGCCATCTTggataaacagaaaacaaaaacaatacgAGTTTCTCAAGATGATACAACATATCACATCCTTTACTCTAAATGACAACGATTCTTACTGCAATGAAGAACTTGGATAAACTTGTAAAGCCACAGTCTTTACCTCACTACTTCCTCAATTCACCAGAACACTGTCAGTTTAGCATCTCGAATGAAGACGTGACTTTCGTGCACTCTTTTCAGCCTGAATCCTGTTCACTTCTGCCCAGCCTTACCAGCCGCCTGAGACGCCCAaacaaaatatatagaaaaatcaGCCACCAGGCACTGAGGTCATCGAAGCGACGACAATGACGACATCTTCAGGCCTGTCGGGAAACATTACAGAGAATTAATGGTGTTAAATCACAAACTGAGCCACTTGAGGATGTGGAAGTTCTTCTTGCCGACACGGATCAGACTGAGTCCGTTTGAGAGGATTTGCTGACCAACAATAAGCACTTGCTCTGGGTTTTCGGCCCTCTGGTGGTTTATCCAGACACCGCCGTCCTTGATCATCTGATAGCTGTGCACAACAGGAcaataaattcattatttttgGCGAAAAAGGCACAGatggaatgcaaaaaaataaataaataaataaagtgcagAATCTGATGGATCATTCCACAAGCACGCACCCGCGGGGTCCGTCAGGAATAGCTCGTGCTCGTCTGCAGGCGTCCAGAACCGTCGTTCCTGGTTCAAGGAAAAACTCATGGAATGGAGCCTCTCGGAAAATCTCCTGCAgttcagtgtcactcatctgctCCAGAGCCTCAATACTGCTGTGATATAGAGCTGTCgtgcacctacacacacacatatacatatataatacaggggggctaataattctgactttaactgtgtgtgtgtgtgtgtatgtatat
>TCONS_00049073
tattattaaaccgattgtttctaaactatttaaatatattgtatttgtaGCTAAAACACCTTTAGCCTCCAAATGTcggaaatatttatcatttctaagCATGGTCTTTCAGACCGAAGACGTCCGCCATCTTggataaacagaaaacaaaaacaatacgAGTTTCTCAAGATGATACAACATATCACATCCTTTACTCTAAATGACAACGATTCTTACTGCAATGAAGAACTTGGATAAACTTGTAAAGCCACAGTCTTTACCTCACTACTTCCTCAATTCACCAGAACACTGTCAGTTTAGCATCTCGAATGAAGACGTGACTTTCGTGCACTCTTTTCAGCCTGAATCCTGTTCACTTCTGCCCAGCCTTACCAGCCGCCTGAGACGCCCAaacaaaatatatagaaaaatcaGCCACCAGGCACTGAGGTCATCGAAGCGACGACAATGACGACATCTTCAGGCCTGTCGGGAAACATTACAGAGAATTAAATCTGATGGATCATTCCACAAGCACGCACCCGCGGGGTCCGTCAGGAATAGCTCGTGCTCGTCTGCAGGCGTCCAGAACCGTCGTTCCTGGTTCAAGGAAAAACTCATGGAATGGAGCCTCTCGGAAAATCTCCTGCAgttcagtgtcactcatctgctCCAGAGCCTCAATACTGCTGTGATATAGAGCTGTCgtgcacctacacacacacatatacatatataatacaggggggctaataattctgactttaactgtgtgtgtgtgtgtgtatgtatat
>TCONS_00048223
CCGAAGACGTCCGCCATCTTggataaacagaaaacaaaaacaatacgAGTTTCTCAAGATGATACAACATATCACATCCTTTACTCTAAATGACAACGATTCTTACTGCAATGAAGAACTTGGATAAACTTGTAAAGCCACAGTCTTTACCTCACTACTTCCTCAATTCACCAGAACACTGTCAGTTTAGCATCTCGAATGAAGACGTGACTTTCGTGCACTCTTTTCAGCCTGAATCCTGTTCACTTCTGCCCAGCCTTACCAGCCGCCTGAGACGCCCAaacaaaatatatagaaaaatcaGCCACCAGGCACTGAGGTCATCGAAGCGACGACAATGACGACATCTTCAGGCCTGTCGGGAAACATTACAGAGAATTACTTGTGATGAGCTGAGCCTGACCGACACTGACCTCTGCTGGGCACATTTGAATGACTTGGTGAATCCTGAGGAGTTTGAGAGGATGCTGTTTCTGTGTGCAGATGGTGTTAAATCACAAACTGAGCCACTTGAGGATGTGGAAGTTCTTCTTGCCGACACGGATCAGACTGAGTCCGTTTGAGAGGATTTGCTGACCAACAATAAGCACTTGCTCTGGGTTTTCGGCCCTCTGGTGGTTTATCCAGACACCGCCGTCCTTGATCATCTGATAGCTGTGCACAACAGGAcaataaattcattatttttgGCGAAAAAGGCACAGatggaatg

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043009 chordate embryonic development biological_process
GO:0071599 otic vesicle development biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0060485 mesenchyme development biological_process
GO:0008283 cell population proliferation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000101563

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049072 False 971 lncRNA 0.44 5 2275525 2299685
TCONS_00049073 False 776 lncRNA 0.43 4 2275525 2299749
TCONS_00048223 True 712 lncRNA 0.45 4 2276598 2299636

Neighbor

gene id symbol gene type direction distance location
XLOC_024389 NA coding downstream 110491 2126816 ~ 2165034 (-)
XLOC_024387 wnt7bb coding downstream 194154 2002715 ~ 2081371 (-)
XLOC_024388 CR385026.1 coding downstream 262134 2012677 ~ 2013391 (-)
XLOC_024386 CR385026.2 coding downstream 301235 1973524 ~ 1974290 (-)
XLOC_024385 NA coding downstream 324081 1946368 ~ 1951444 (-)
XLOC_024391 NA coding upstream 9665 2309414 ~ 2313033 (-)
XLOC_024392 mrps35 coding upstream 33509 2333258 ~ 2355107 (-)
XLOC_024393 NA coding upstream 183363 2483112 ~ 2485048 (-)
XLOC_024394 BX957346.1 coding upstream 246594 2546343 ~ 2638817 (-)
XLOC_024395 BX957346.3 coding upstream 372742 2672491 ~ 2685982 (-)
XLOC_024382 dre-let-7i non-coding downstream 645776 1629655 ~ 1629749 (-)
XLOC_024405 NA non-coding upstream 1002775 3302524 ~ 3306305 (-)

Expression


Co-expression Network