G523827


Basic Information

Item Value
gene id G523827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55748868 ~ 55749089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593729
ctcttgtccttgccgatgacaagcttacccataacatgatgcagccaccaccatacttgaacatatgaagagtggtactcagtgatgtgttggatttgccccaaacataacgttttgtattcaGACCAAAGATGTATTTCTTTGCCAGATGTTTTACAGTATTAATTTAGTGCCTTAtagcaaacaggatacatgttttggaatattttactTCCTTATTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593729 True 222 lncRNA 0.37 1 55748868 55749089

Neighbor

gene id symbol gene type direction distance location
LOC110526167 LOC106587078 coding upstream 180701 55563439 ~ 55568167 (+)
LOC110526163 LOC106587071 coding upstream 300732 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 384126 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 613246 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 680625 55066200 ~ 55068243 (+)
LOC110526169 LOC106587076 coding downstream 154975 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 216133 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 222351 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 233181 55982270 ~ 55990919 (+)
LOC110526175 LOC106587084 coding downstream 271536 56020625 ~ 56120747 (+)
G523826 NA non-coding upstream 1751 55746790 ~ 55747117 (+)
G523825 NA non-coding upstream 3969 55744693 ~ 55744899 (+)
G523822 NA non-coding upstream 11434 55737182 ~ 55737434 (+)
G523817 NA non-coding upstream 19920 55728731 ~ 55728948 (+)
G523816 NA non-coding upstream 22099 55726538 ~ 55726769 (+)
G523828 NA non-coding downstream 61 55749150 ~ 55749552 (+)
G523829 NA non-coding downstream 719 55749808 ~ 55750023 (+)
G523845 NA non-coding downstream 36141 55785230 ~ 55785515 (+)
G523849 NA non-coding downstream 40890 55789979 ~ 55790212 (+)
G523856 NA non-coding downstream 51777 55800866 ~ 55869285 (+)
G523529 NA other upstream 264261 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 807995 54793125 ~ 54954478 (+)
G521914 NA other upstream 1478609 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1793738 53925942 ~ 53955130 (+)
G525645 NA other downstream 1826995 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1855019 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1872759 57621795 ~ 57635241 (+)

Expression


Co-expression Network