XLOC_024391


Basic Information

Item Value
gene id XLOC_024391
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2309414 ~ 2313033 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049309
GGCAGGGCTAATTCGCTCCAGCTCCCTGATTGGTGGAATTCTGCACagcattgtgggtaatgtagtttttctcaCAAATGATGCTAATAAGCATGACTGTTTTCAAAATTCTGACATATTTGTGTTCATCAAAACATTTGATGTTGATTAGCTTCCTCACAACAGCTTTATTATTCAAAATAAGTTGGAAAATCTATGAATAACTCTTTCCCGAGGGATTTAAGAGTGTCCTTCAGACTCGTATTTGGTCATTtcttgcaaacaaaacaaaatggtgGATCACATTTCCATGCGCTCTGGGAATGAATGATGTATGGCTGCGGTGGAGCttatcaaaatagcaaaacagCCGTGATCGATTGTAATGAAGTTTAATAGCGCGCTGAGAAAGGAGGGCATTCACGACTGTTGACGTTGAGAAAAGAGCCAAAATTCCCAACAGCGCATCTGTCAGAATCCCAAATGCTCCACAATAGCATGTTTTTTAAGCTCGCGGCACCTTTCAGATGTGAATCTCTGCCTGTTTTTCTCAGCCGCCATAATTAAATGCTGAAAGGTGAAGTGAGCTAGCAGAAAATAAGGCAGTTAATGAGAtacaaaagacattttgaaacCACAAAGCTGTGTTGAGGAGAAAGCTGGATCTGTTCTGCAAACATGCACCTCTGTTGGCTGTTTCCCTGCTGTAAAATTAATACTGAGGGGTTTTAGGATGCATAAAAAACCAAAGAGGGTGATACAGTGTAACATATGATTCTGGCACTGAAGTTGAGGATCCAAATGTAGCATCGTTATTAACAAGAGTAGTCAGACAATGGTTACAAGCAGGAGCAAATGTTAACATAAAGAGCAATCCAAAAGAGTGGTCGTGTCGGATGTAGGGATGGCTGACTTGAAACTGACAAGTGATCAGGTgatgtgactaaagcgattcaaagcatcgtcatttcagaagcgtttcgagacctggcaaatCTGTGTTTAACTAACCCTCCATCTCATATAGCCTAGTGGACCGTGCATGAGCACAGCTCTAAGTTCGAATCCTGACCTGTACCAATATTCTGAAATTACgacttgatgtattttattaatgttacattttttctGACCAACAACAAGGCATATTACACACacgttacaagaacagagcatttaaaaactaacattATAACTAAACATTTATATCTTaactgaagctgttccagaggaACACATAAActaccactaggtgtcactgtagagacagATTTCAAAACACTAAAGTGCAAGTGATGTCGAGATCCTAAAGtgcaagtgttttgaaacactgcaccaaagcatgatccgaaacacccaggtcacgtgactaaagtgtttcaaaacacccaggtcacgtgactaaagtgtttcgaaacatcaggtcatgtgactaaggtgTTTCAAAAcatcaggtcacgtgactaaagtgttttgaaacacctaggtcacgtgactaaagtgtttcaaaacatcaggtcacgtgactaagctAATtggaaacacccaggtcacgtgactaaagtgtttaaaaacatcaggtcatgtgactaaagtgtttaaaaacatcaggtcatgtgactaaagtgtttcaaaacatcaggtcatgtgactaaagtgtttcaaaacatcaggtcatgtgactaaagtgtttcgaaacatcaggtcacgtgactaaggtgattggaaacacccaggtcacgtgactaaggtgTTTCAAAAcatcaggtcacgtgactaaggactattatttatgaaaaatatacTAATTCATAATATGCAGACACATGCAAATACATGCAAGCATATTTCAAACTTTGAACTCACTGtcataatgataatagtaatagtaaataaataataatttactaataatTTTCTGCCATAATATTTCATTAACACTAAATCTTAATTCAGTGCAAACACATCATCATTTCTTCATAATAAAACAGTACTTTGTACCCTaagttatttataatttttatttatttacagatttttatttattttgtgtataaAACTTTCACAAAACCAGAATTGGCTGGATAAAGTCTTGTTTTTGTCCTGTGGATATGAGCGTATGCCTAAGATATGGGCTGTCCTCCTGCTGCTGACACTGACTGTACAGTTTTATAAAGcatacagaaatgtaaatactgtagtaaagcCTTATTCATGTCCATGTAGTGCTGATGGATTGATGAAATGATAACCTGTGATCTGTTGTAAACATTCGCTCCAGATAACTGTGGTGtaaataaaacatgcat
>TCONS_00049310
AGCTTGTGAACTTGACAGCTTTATTGgaagaactacaatcccatgatGCATTGCACACGTATCAATCAAATGATAGAAAAAGATTAAACTATTGATTAAAAGTAGTTTGTTGTATTTATACAAATAGTATATTTTATGGTTATATGTAGTGACATGAGTGGGCAGGGCTAATTCGCTCCAGCTCCCTGATTGGTGGAATTCTGCACagcattgtgggtaatgtagtttttctcaCAAATGATGCTAATAAGCATGACTGTTTTCAAAATTCTGACATATTTGTGTTCATCAAAACATTTGATGTTGATTAGCTTCCTCACAACAGCTTTATTATTCAAAATAAGTTGGAAAATCTATGAATAACTCTTTCCCGAGGGATTTAAGAGTGTCCTTCAGACTCGTATTTGGTCATTtcttgcaaacaaaacaaaatggtgGATCACATTTCCATGCGCTCTGGGAATGAATGATGTATGGCTGCGGTGGAGCttatcaaaatagcaaaacagCCGTGATCGATTGTAATGAAGTTTAATAGCGCGCTGAGAAAGGAGGGCATTCACGACTGTTGACGTTGAGAAAAGAGCCAAAATTCCCAACAGCGCATCTGTCAGAATCCCAAATGCTCCACAATAGCATGTTTTTTAAGCTCGCGGCACCTTTCAGATGTGAATCTCTGCCTGTTTTTCTCAGCCGCCATAATTAAATGCTGAAAGGTGAAGTGAGCTAGCAGAAAATAAGGCAGTTAATGAGAtacaaaagacattttgaaacCACAAAGCTGTGTTGAGGAGAAAGCTGGATCTGTTCTGCAAACATGCACCTCTGTTGGCTGTTTCCCTGCTGTAAAATTAATACTGAGGGGTTTTAGGATGCATAAAAAACCAAAGAGGGTGATACAGTGTAACATATGATTCTGGCACTGAAGTTGAGGATCCAAATGTAGCATCGTTATTAACAAGAGTAGTCAGACAATGGTTACAAGCAGGAGCAAATGTTAACATAAAGAGCAATCCAAAAGAGTGGTCGTGTCGGATGTAGGGATGGCTGACTTGAAACTGACAAGTGATCAGGTgatgtgactaaagcgattcaaagcatcgtcatttcagaagcgtttcgagacctggcaaatCTGTGTTTAACTAACCCTCCATCTCATATAGCCTAGTGGACCGTGCATGAGCACAGCTCTAAGTTCGAATCCTGACCTGTACCAATATTCTGAAATTACgacttgatgtattttattaatgttacattttttctGACCAACAACAAGGCATATTACACACacgttacaagaacagagcatttaaaaactaacattATAACTAAACATTTATATCTTaactgaagctgttccagaggaACACATAAActaccactaggtgtcactgtagagacagATTTCAAAACACTAAAGTGCAAGTGATGTCGAGATCCTAAAGtgcaagtgttttgaaacactgcaccaaagcatgatccgaaacacccaggtcacgtgactaaagtgtttcaaaacacccaggtcacgtgactaaagtgtttcgaaacatcaggtcatgtgactaaggtgattcgaattACCAAGGTCATGTAACTAAGGTGAtatgaaacacccaggtcacatgactaaagtgtttcgaaacatcaGGTCACGTAACTGAGGTGATGGGAAACagccaggtcatgtgactaaggtgattcgagtTACCCAGGTCActtgactaaagtgtttcgaaacatcaggtcacgtgactaagctAATTGGAAACactcaggtcacgtgactaaagtgtttcaaaacatcaggtcatgtgactaaagtgtttcgaaacatcaGGTCACGTGACAggtgatttgaaacacccaggtcacgtgactaagctAATtggaaacacccaggtcacgtgactaaagtgtttaaaaacatcaggtcatgtgactaaagtgtttaaaaacatcaggtcatgtgactaaagtgtttcaaaacatcaggtcatgtgactaaagtgTTTCAAAAcatcaggtcacgtgactaaggactattatttatgaaaaatatacTAATTCATAATATGCAGACACATGCAAATACATGCAAGCATATTTCAAACTTTGAACTCACTGtcataatgataatagtaatagtaaataaataataatttactaataatTTTCTGCCATAATATTTCATTAACACTAAATCTTAATTCAGTGCAAACACATCATCATTTCTTCATAATAAAACAGTACTTTGTACCCTaagttatttataatttttatttatttacagatttttatttattttgtgtataaAACTTTCACAAAACCAGAATTGGCTGGATAAAGTCTTGTTTTTGTCCTGTGGATATGAGCGTATGCCTAAGATATGGGCTGTCCTCCTGCTGCTGACACTGACTGTACAGTTTTATAAAGcatacagaaatgtaaatactgtagtaaagcCTTATTCATGTCCATGTAGTGCTGATGGATTGATGAAATGATAACCTGTGATCTGTTGTAAACATTCGCTCCAGATAACTGTGGTGtaaataaaacatgcat
>TCONS_00049311
ttattattcaattatttatttactctttatttatttattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgagaacagtttatttattcatccttttTTCCACGTACCAACACCTTAATGACCACATCACAACCAAGCAAATTTCTGCAACAACcactttaaaaatctaataatatgACAACAGATATGGAAGGACTAGAACAACCTTTTCTGGAACAGTTTTGGTCAACTATGGTCTATTCATGCAAAAACAATAGGATGCACTGcgtttattaatttacttattcgttcattcattcattcattcgttcgttcattcattcaattttgcACTGAGTACCACATAGTGACACCCTAGCCATCACACCACAACCATGCAGAAGAGTtttgaaaaacacaaatattataaTCATAAATTCTCTTTTTATTGCTACAATGaggaaattgttaaaatattcttGTGTTGTTGCCACCTACTGGTGGTTTAagtgtcatatttatttattgattatagGCCTAAAACCAGCCATGATACCAGCACAAAAACACAGTTTAAATATCATTACCAACAAAAAATCCCCCAAAAATTAGGATACCTTCCATATTGTCACTATTTCAAACAATACACTTCTGTTTTTCCCATAGGAATCTTTAAGTCACTAAAGGTCCCTTTCaaatgtgcagttttattcaATCTTTGACTTAATCTGAACTGAAAtatgaagagagggcggggcatagggtagctcctccccttaaaaacTGCCAATAGTGTTCAGTAATGAACCAAACAGACCAGAAGAGAATCCCAACATTTCAAACTTTAATTAGCTTGTGAACTTGACAGCTTTATTGgaagaactacaatcccatgatGCATTGCACACGTATCAATCAAATGATAGAAAAAGATTAAACTATTGATTAAAAGTAGTTTGTTGTATTTATACAAATAGTATATTTTATGGTTATATGTAGTGACATGAGTGGGCAGGGCTAATTCGCTCCAGCTCCCTGATTGGTGGAATTCTGCACagcattgtgggtaatgtagtttttctcaCAAATGATGCTAATAAGCATGACTGTTTTCAAAATTCTGACATATTTGTGTTCATCAAAACATTTGATGTTGATTAGCTTCCTCACAACAGCTTTATTATTCAAAATAAGTTGGAAAATCTATGAATAACTCTTTCCCGAGGGATTTAAGAGTGTCCTTCAGACTCGTATTTGGTCATTtcttgcaaacaaaacaaaatggtgGATCACATTTCCATGCGCTCTGGGAATGAATGATGTATGGCTGCGGTGGAGCttatcaaaatagcaaaacagCCGTGATCGATTGTAATGAAGTTTAATAGCGCGCTGAGAAAGGAGGGCATTCACGACTGTTGACGTTGAGAAAAGAGCCAAAATTCCCAACAGCGCATCTGTCAGAATCCCAAATGCTCCACAATAGCATGTTTTTTAAGCTCGCGGCACCTTTCAGATGTGAATCTCTGCCTGTTTTTCTCAGCCGCCATAATTAAATGCTGAAAGGTGAAGTGAGCTAGCAGAAAATAAGGCAGTTAATGAGAtacaaaagacattttgaaacCACAAAGCTGTGTTGAGGAGAAAGCTGGATCTGTTCTGCAAACATGCACCTCTGTTGGCTGTTTCCCTGCTGTAAAATTAATACTGAGGGGTTTTAGGATGCATAAAAAACCAAAGAGGGTGATACAGTGTAACATATGATTCTGGCACTGAAGTTGAGGATCCAAATGTAGCATCGTTATTAACAAGAGTAGTCAGACAATGGTTACAAGCAGGAGCAAATGTTAACATAAAGAGCAATCCAAAAGAGTGGTCGTGTCGGATGTAGGGATGGCTGACTTGAAACTGACAAGTGATCAGGTgatgtgactaaagcgattcaaagcatcgtcatttcagaagcgtttcgagacctggcaaatCTGTGTTTAACTAACCCTCCATCTCATATAGCCTAGTGGACCGTGCATGAGCACAGCTCTAAGTTCGAATCCTGACCTGTACCAATATTCTGAAATTACgacttgatgtattttattaatgttacattttttctGACCAACAACAAGGCATATTACACACacgttacaagaacagagcatttaaaaactaacattATAACTAAACATTTATATCTTaactgaagctgttccagaggaACACATAAActaccactaggtgtcactgtagagacagATTTCAAAACACTAAAGTGCAAGTGATGTCGAGATCCTAAAGtgcaagtgttttgaaacactgcaccaaagcatgatccgaaacacccaggtcacgtgactaaagtgtttcaaaacacccaggtcacgtgactaaagtgtttcgaaacatcaggtcatgtgactaaggtgattcgaattACCAAGGTCATGTAACTAAGGTGAtatgaaacacccaggtcacatgactaaagtgtttcgaaacatcaGGTCACGTAACTGAGGTGATGGGAAACagccaggtcatgtgactaaggtgattcgagtTACCCAGGTCActtgactaaagtgtttcgaaacatcaggtcacgtgactaagctAATTGGAAACactcaggtcacgtgactaagctAATtggaaacacccaggtcacgtgactaaagtgtttaaaaacatcaggtcatgtgactaaagtgtttaaaaacatcaggtcatgtgactaaagtgtttcaaaacatcaggtcatgtgactaaagtgtttcaaaacatcaggtcatgtgactaaagtgtttcgaaacatcaggtcacgtgactaaggtgattggaaacacccaggtcacgtgactaaggtgTTTCAAAAcatcaggtcacgtgactaaggactattatttatgaaaaatatacTAATTCATAATATGCAGACACATGCAAATACATGCAAGCATATTTCAAACTTTGAACTCACTGtcataatgataatagtaatagtaaataaataataatttactaataatTTTCTGCCATAATATTTCATTAACACTAAATCTTAATTCAGTGCAAACACATCATCATTTCTTCATAATAAAACAGTACTTTGTACCCTaagttatttataatttttatttatttacagatttttatttattttgtgtataaAACTTTCACAAAACCAGAATTGGCTGGATAAAGTCTTGTTTTTGTCCTGTGGATATGAGCGTATGCCTAAGATATGGGCTGTCCTCCTGCTGCTGACACTGACTGTACAGTTTTATAAAGcatacagaaatgtaaatactgtagtaaagcCTTATTCATGTCCATGTAGTGCTGATGGATTGATGAAATGATAACCTGTGATCTGTTGTAAACATTCGCTCCAGATAACTGTGGTGtaaataaaacatgcat

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0070142 synaptic vesicle budding biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0016050 vesicle organization biological_process
GO:0097060 synaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0044309 neuron spine cellular_component
GO:0043197 dendritic spine cellular_component
GO:0098794 postsynapse cellular_component
GO:0015631 tubulin binding molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049309 False 2288 lncRNA 0.38 2 2309414 2312015
TCONS_00049310 False 2574 lncRNA 0.37 3 2309414 2312175
TCONS_00049311 True 3434 lncRNA 0.36 2 2309414 2313033

Neighbor

gene id symbol gene type direction distance location
XLOC_024390 NA coding downstream 9665 2275525 ~ 2299749 (-)
XLOC_024389 NA coding downstream 144380 2126816 ~ 2165034 (-)
XLOC_024387 wnt7bb coding downstream 228043 2002715 ~ 2081371 (-)
XLOC_024388 CR385026.1 coding downstream 296023 2012677 ~ 2013391 (-)
XLOC_024386 CR385026.2 coding downstream 335124 1973524 ~ 1974290 (-)
XLOC_024392 mrps35 coding upstream 20225 2333258 ~ 2355107 (-)
XLOC_024393 NA coding upstream 170079 2483112 ~ 2485048 (-)
XLOC_024394 BX957346.1 coding upstream 233310 2546343 ~ 2638817 (-)
XLOC_024395 BX957346.3 coding upstream 359458 2672491 ~ 2685982 (-)
XLOC_024396 adpgk coding upstream 393689 2706722 ~ 2724033 (-)
XLOC_024385 NA non-coding downstream 357970 1946368 ~ 1951444 (-)
XLOC_024405 NA non-coding upstream 989491 3302524 ~ 3306305 (-)
XLOC_024407 NA non-coding upstream 1064790 3377823 ~ 3393705 (-)

Expression


Co-expression Network