G523856


Basic Information

Item Value
gene id G523856
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55800866 ~ 55869285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593761
GGTTccagattttagattttttttttttttgcagtttacATTACACTGACATATTTTGCCACACAACAGATCAGCTATAGATCATATGCAGGTTGTTCACCTGTGTAGAGAGCAGAATGTAAAATATTTTGGCCTAGACAAAGTATTTGACCCTCTCATCAAAGATATGAAAGCTCTAAGAGAGTAGCATTAAGATAGGTGATGGGAGAGTTCTAAAAAGGTACTTTTACAAGACAATTTATGATTTCATTGCATTGGGGGTTTCTGGAGAACTTTCAGTAAGAACATTCATTTCTGTCACTACTGTGATATTGATAGAAAAATGCCAGTACTCTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC109087431

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593761 True 336 lncRNA 0.35 2 55800866 55869285

Neighbor

gene id symbol gene type direction distance location
LOC110526167 LOC106587078 coding upstream 232699 55563439 ~ 55568167 (+)
LOC110526163 LOC106587071 coding upstream 352730 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 436124 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 665244 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 732623 55066200 ~ 55068243 (+)
LOC110526169 LOC106587076 coding downstream 34779 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 95937 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 102155 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 112985 55982270 ~ 55990919 (+)
LOC110526175 LOC106587084 coding downstream 151340 56020625 ~ 56120747 (+)
G523849 NA non-coding upstream 10654 55789979 ~ 55790212 (+)
G523845 NA non-coding upstream 15351 55785230 ~ 55785515 (+)
G523829 NA non-coding upstream 50843 55749808 ~ 55750023 (+)
G523828 NA non-coding upstream 51314 55749150 ~ 55749552 (+)
G523827 NA non-coding upstream 51777 55748868 ~ 55749089 (+)
G523896 NA non-coding downstream 77 55869362 ~ 55869565 (+)
G523904 NA non-coding downstream 13686 55882971 ~ 55883201 (+)
G523908 NA non-coding downstream 20412 55889697 ~ 55889936 (+)
G523914 NA non-coding downstream 24391 55893676 ~ 55893945 (+)
G523915 NA non-coding downstream 25779 55895064 ~ 55895327 (+)
G523529 NA other upstream 316259 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 859993 54793125 ~ 54954478 (+)
G521914 NA other upstream 1530607 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1845736 53925942 ~ 53955130 (+)
G525645 NA other downstream 1706799 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1734823 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1752563 57621795 ~ 57635241 (+)

Expression


Co-expression Network