G523939 (zdh13)


Basic Information

Item Value
gene id G523939
gene name zdh13
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55930728 ~ 55940668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593851
GTTGTTAATGGCTGCCCAGTGTAAGAGGGAGACATTCTCCTTGTCAGGCTGCCTCACATCGTAACCAGCCTCCACCAGTTCCTTACATCGGTCCAGGATACCAAACTGTGTTGCTTTGACAATGTCCCAGCTGCTGCTGTCATCCATATGCGACCGTTTCTTGGGCTGCTGAGTGGGGTCTATCATCTGGTCAGCTCGTGGGCCAAATTGGCCATGGAAAGCAGGCATGAACCCGTGCGCCAAACCACCGCCGTGACCCCCGAATCCATGCACCGCAGGCCCATGCGAGTGACCCCCGTGGCCTTGGCAACCGTCATGGTTGTGAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593851 True 327 lncRNA 0.57 2 55930728 55940668

Neighbor

gene id symbol gene type direction distance location
LOC110526169 LOC106587076 coding upstream 14647 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 coding upstream 362561 55563439 ~ 55568167 (+)
LOC110526163 LOC106587071 coding upstream 482592 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 565986 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 795106 55127056 ~ 55135622 (+)
LOC110526172 LOC106561172 coding downstream 24554 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 30772 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 41602 55982270 ~ 55990919 (+)
LOC110526175 LOC106587084 coding downstream 79957 56020625 ~ 56120747 (+)
LOC110526177 LOC106587086 coding downstream 244464 56185132 ~ 56234100 (+)
G523936 zdh13 non-coding upstream 3513 55926367 ~ 55927215 (+)
G523915 NA non-coding upstream 35401 55895064 ~ 55895327 (+)
G523914 NA non-coding upstream 36783 55893676 ~ 55893945 (+)
G523908 NA non-coding upstream 40792 55889697 ~ 55889936 (+)
G523904 NA non-coding upstream 47527 55882971 ~ 55883201 (+)
G523959 NA non-coding downstream 28770 55969438 ~ 55970160 (+)
G524069 NA non-coding downstream 186851 56127519 ~ 56127821 (+)
G523529 NA other upstream 446121 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 989855 54793125 ~ 54954478 (+)
G521914 NA other upstream 1660469 54269925 ~ 54270259 (+)
G525645 NA other downstream 1635416 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1663440 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1681180 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1698806 57639437 ~ 57642487 (+)

Expression


Co-expression Network