G523959


Basic Information

Item Value
gene id G523959
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55969438 ~ 55970160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593874
CGGAGACAAATCGCCAGGCGTTCAACTGGGCTGATGGACTCCCGGTAGTTGTTATCCATCCGGGTGATCGAACTGGCTTCGGTCCAGACGAAAGTAACTTCGGAATTCCTCTCAAAACAGTCGAAGCTCTTGAATTAGACAGTGGAACTCCCCTGCCTGCTTTCGGGACTTTAACCATCTCTGGACCCACGCAGACCTGCGCTTTCGGCGGGGCTGGTCCCGGCCCAACAGTGCGATCAAGACCACCTTCATCAACGTCGGTCTCATTGTTGAAAGAGCCTACTCTGCTATCTTGACTATTTATTATTGCATTTTGGAGGGaaattatttttttccataaggCGAGGACAAGTGGACTTTGTGTATTGTAAGTGTTTGGACCGCTACCATGGAGTGTGTCTGAAAGTGGATGTGTCAACAGAAGTGGGTGTATGGAAAGAGAATCAGCTAATTGGGCAGATTTGTTGCCACTCAAGACTGTTTTATGTGTCTGGGCTGCACGACAAGTACATTGTTGACAACTATAGCATTTTAGCTAAGCTTTTTCCTAACCTGAAGCACATTCTCCTAACCTGACACATTAATTATCCAAACATGCTACACATTTTAGCTAATGTTAACCCCTTTCCAAACCATAAcctcattctcctaacctgccacgttaattctcctaacctgctatgttaattctcct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593874 True 694 lncRNA 0.46 2 55969438 55970160

Neighbor

gene id symbol gene type direction distance location
LOC110526172 LOC106561172 coding upstream 1347 55965222 ~ 55968091 (+)
LOC110526169 LOC106587076 coding upstream 53357 55904064 ~ 55916081 (+)
LOC110526167 LOC106587078 coding upstream 401271 55563439 ~ 55568167 (+)
LOC110526163 LOC106587071 coding upstream 521302 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 604696 55351729 ~ 55364742 (+)
LOC110526171 LOC106587080 coding downstream 1280 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 12110 55982270 ~ 55990919 (+)
LOC110526175 LOC106587084 coding downstream 50465 56020625 ~ 56120747 (+)
LOC110526177 LOC106587086 coding downstream 214972 56185132 ~ 56234100 (+)
LOC110525039 NA coding downstream 351543 56321703 ~ 56328003 (+)
G523939 zdh13 non-coding upstream 28770 55930728 ~ 55940668 (+)
G523936 zdh13 non-coding upstream 42223 55926367 ~ 55927215 (+)
G523915 NA non-coding upstream 74111 55895064 ~ 55895327 (+)
G523914 NA non-coding upstream 75493 55893676 ~ 55893945 (+)
G524069 NA non-coding downstream 157359 56127519 ~ 56127821 (+)
G524073 NA non-coding downstream 169769 56139929 ~ 56140478 (+)
G524074 LOC102208280 non-coding downstream 170536 56140696 ~ 56142206 (+)
G523529 NA other upstream 484831 55484249 ~ 55484607 (+)
LOC110526161 LOC106587065 other upstream 1028565 54793125 ~ 54954478 (+)
G521914 NA other upstream 1699179 54269925 ~ 54270259 (+)
G525645 NA other downstream 1605924 57576084 ~ 57581070 (+)
G525861 LOC106587122 other downstream 1633948 57604108 ~ 57606367 (+)
fbxo3 fbxo3 other downstream 1651688 57621795 ~ 57635241 (+)
LOC110526214 LOC106587124 other downstream 1669314 57639437 ~ 57642487 (+)

Expression


Co-expression Network